Pcdha5 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha5
Entrez Gene ID	393087
Full Name	protocadherin alpha 5
Synonyms	rCNRv05
General protein information	Preferred Names protocadherin alpha 5 Names protocadherin alpha-5 cadherin-related neuronal receptor 5
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	member of a family of synaptic cadherins and Reelin receptors, integral plasma membrane proteins that may play a critical role in maintaining specific cell-cell interactions in the brain [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_199505.4	NP_955799.1	protocadherin alpha-5 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA5	NP_061731.1
Pan troglodytes (chimpanzee)	PCDHA5	NP_001076054.1
Rattus norvegicus (Norway rat)	Pcdha5	NP_955799.1
Bos taurus (cattle)	PCDHA5	XP_003586367.2
Mus musculus (house mouse)	Pcdha5	NP_034089.1
	PCDHA5	XP_001087166.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05404	NM_199505.4 Latest version!	Rattus norvegicus protocadherin alpha 5 (Pcdha5), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$475.30 $679.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha5 ( NM_199505.4 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955799.1 Rattus norvegicus protocadherin alpha 5 (Pcdha5), mRNA.

Price & Availability↑

CloneID	ORa05404
Clone ID Related Accession (Same CDS sequence)	NM_199505.4
Accession Version	NM_199505.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2805bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-09-30
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-5 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY573979.1. On Nov 6, 2005 this sequence version replaced NM_199505.3. ##Evidence-Data-START## Transcript exon combination :: AY573979.1, AB113388.1 [ECO:0000332] ##Evidence-Data-END##

ATGGTATATT CCCAGCGAGG AAGTCCGGGA TTTCGGCGCC TGCTGATCTC CTTTGTGCTT 
CTCGTAGCCT GGGAGGCAGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGAC TGGAGCTGGC GGAGCTGGTG 
CCCCGTCTGT TCAGGGTGGC GTCCAAGGAC CGCAGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCAGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA CGACAACCCG CCTACATTCT CCAGACCTGA ACAAAGATTA 
TTTATTTTGG AGTCAAGAAT GCCAGACTCG CGGTTTCCAG TAGAGGGCGC ATCTGATTTG 
GATGTGGGAG CCAATGCAGC CTTGAACTAT AAGATAAATC CTAATGAATA TTTCGACTTG 
GATGTTAAAC GAAACGAAGA AGAAACAAGC ATTTTGCACC TAGTTTTGAA GAAGCCGCTA 
GACAGAGAAG AAACCCAAGA GCATCATTTG TTGCTGATGG CAACTGATGG AGGGAAACCT 
GAACTAACAG GTACTGTTCA GTTACTGATT GATGTATTGG ATGCAAACGA TAATGCTCCG 
GAGTTTGATA GATCTGTTTA TAATGTCAGA TTGTTAGAAA ACACACCCAA CGAGACGTTA 
GTAATTAAAC TCAACGCTTC AGACGCGGAT GAGGGAATTA ATAAAGAAAT ACTGTATTTC 
TTCAGTAATC TTGTTCTTGA TGGTGTAAAA TCAAAATTTA CAATAAATTC TACCAGTGGA 
GAAATAAAGG TTAAGGGCGA GCTGGATTAC GAAGACTGTA AATTATACGA GATTAATATT 
GATGCAGTGG ATAGAAGTTC ATTCCCCCTA GCAGGACACT GCAAAGTCAT AGTGAAACTT 
GTGGATGTAA ATGATAATGT GCCTGAGATG TCCATAACCT CCATTTTTTT GCCTATCAAA 
GAGGACGCTC CATTGGCGAC TGTCATCGCC CTGATTAGCG TGTCAGACCG TGATTCAGGC 
GCCAATGGGC AGGTGACCTG CTCCTTGACA CCCCACATCC CCTTCAAACT GGTGTCCACT 
TTCAAGAATT ACTATTCACT TGTGCTGGAC AGAGCTCTGG ACCGAGAGAC CATCGCTAAC 
TATGACGTGG TTGTGACCGC CCGCGATGGA GGCTCGCCCT CCCTGTGGGC CACGGCTAGC 
GTGTCTGTGG AGGTGGCTGA TGTGAACGAC AACGTGCCTG CGTTCGCGCA GCCTGAATAC 
ACTGTGTTTG TGAAGGAGAA TAATCCGCCT GGCGCGCACA TTTTCACGGT GTCAGCAGTG 
GACGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGAG GAGAGTGGGC 
GAGCGCTTGT TGTCGAGCTA TGTGTCTGTG CACGCCGAGA GCGGCAAGGT GTTCGCACTG 
CAGCCTCTGG ACCATGAGGA ACTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAATGAC 
AATGCACCCG CGCTCCTGGG GCCTCAGGGT GGAGGAGCAA TTATTGAGTT GTTGTCCCGG 
CCAGTGAGTT CCGGCCATGT GGTTGCGAAG GTGCGTGCAG TGGATGCGGA CTCTGGCTAC 
AACGCGTGGT TGTCTTACGA GCTGCAGCCA GCGACAGGCG CTGTGCGCAG CCCGTTCCGC 
GTGGGGTTAT ATACTGGTGA GATCAGCACC ACACGTGTTC TGGATGAAGC GGACATGCCA 
CGTCAACGCT TGTTGGTGCT GGTGAAGGAC CACGGCGAGC CACCGCTGAC AGCTACGGCC 
ACCTTTCTGG TGTCTCTAGT GGAGAACAGC CAGACACCGA AGGTCTCATC CAGAGTGTTG 
GTTGGAACCT CTGGTTCAGA CTCCACACTG ATAGATGTCA ACGTGTACCT GATCATCGCC 
ATCTGCGCGG TGTCCAGCTT GTTGGTGCTC ACCCTGCTGT TGTACACAGC GCTGCGCTGC 
TCCGCGACAC CCACAGATGG AGTCTGTGCT CCAGGGAAGC CCATGCTGGT GTGCTCTAGT 
GAGGTGGGGA CCTGGTCCTA CTCGCAGCAG AGGCGACAGA AGGTGTGCTC TGGAGAGGGT 
CCACCCAAGA CCGACCTCAT GGCCTTCAGC CCCAGCCTAC CTCAGGGACC CAGCTCTTCA 
GAGAATCCCC GACAGCCCAA CCCTGACTGG CGCTACTCTG CCTCGCTAAG AGCCGGCATG 
CACAGCTCTG TGCACCTGGA GGAGGCTGGC ATTCTACGGG CTGGTCCAGG AGGGCCTGAT 
CAACAGTGGC CAACAGTATC CAGTGCAACA CCAGAACCAG AGGCAGGAGA GGTGTCCCCT 
CCAGTGGGCG CTGGTGTCAA CAGCAACAGC TGGACCTTTA AATACGGACC CGGCAACCCC 
AAACAGCCCG GTCCCGGTGA GTTGCCAGAC AAATTCATTA TCCCAGGATC TCCTGCAATC 
ATCTCCATCC GGCAGGAGTC TGCTAACAAC CAAATTGACA AAAGCGATTT TATAACCTTC 
GGCAAAAAGG AGGAGACCAA GAAAAAGAAG AAAAAGAAGA AGGGTAACAA GACCCAGGAG 
AAAAAAGAGA AAGGGAACAG CACGACGGAC AACAGTGACC AGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955799.1
CDS	183..2987
Translation	MVYSQRGSPGFRRLLISFVLLVAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKDRRDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPTFSRPEQRLFILESRMPDSRFPVEGASDLDVGANAALNYKINPNEYFDLDVKRNEEETSILHLVLKKPLDREETQEHHLLLMATDGGKPELTGTVQLLIDVLDANDNAPEFDRSVYNVRLLENTPNETLVIKLNASDADEGINKEILYFFSNLVLDGVKSKFTINSTSGEIKVKGELDYEDCKLYEINIDAVDRSSFPLAGHCKVIVKLVDVNDNVPEMSITSIFLPIKEDAPLATVIALISVSDRDSGANGQVTCSLTPHIPFKLVSTFKNYYSLVLDRALDRETIANYDVVVTARDGGSPSLWATASVSVEVADVNDNVPAFAQPEYTVFVKENNPPGAHIFTVSAVDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPALLGPQGGGAIIELLSRPVSSGHVVAKVRAVDADSGYNAWLSYELQPATGAVRSPFRVGLYTGEISTTRVLDEADMPRQRLLVLVKDHGEPPLTATATFLVSLVENSQTPKVSSRVLVGTSGSDSTLIDVNVYLIIAICAVSSLLVLTLLLYTALRCSATPTDGVCAPGKPMLVCSSEVGTWSYSQQRRQKVCSGEGPPKTDLMAFSPSLPQGPSSSENPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199505.4
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 5 (Pcdha5), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199505.4

ORF Insert Sequence:

ATGGTATATT CCCAGCGAGG AAGTCCGGGA TTTCGGCGCC TGCTGATCTC CTTTGTGCTT 
CTCGTAGCCT GGGAGGCAGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGAC TGGAGCTGGC GGAGCTGGTG 
CCCCGTCTGT TCAGGGTGGC GTCCAAGGAC CGCAGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCAGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA CGACAACCCG CCTACATTCT CCAGACCTGA ACAAAGATTA 
TTTATTTTGG AGTCAAGAAT GCCAGACTCG CGGTTTCCAG TAGAGGGCGC ATCTGATTTG 
GATGTGGGAG CCAATGCAGC CTTGAACTAT AAGATAAATC CTAATGAATA TTTCGACTTG 
GATGTTAAAC GAAACGAAGA AGAAACAAGC ATTTTGCACC TAGTTTTGAA GAAGCCGCTA 
GACAGAGAAG AAACCCAAGA GCATCATTTG TTGCTGATGG CAACTGATGG AGGGAAACCT 
GAACTAACAG GTACTGTTCA GTTACTGATT GATGTATTGG ATGCAAACGA TAATGCTCCG 
GAGTTTGATA GATCTGTTTA TAATGTCAGA TTGTTAGAAA ACACACCCAA CGAGACGTTA 
GTAATTAAAC TCAACGCTTC AGACGCGGAT GAGGGAATTA ATAAAGAAAT ACTGTATTTC 
TTCAGTAATC TTGTTCTTGA TGGTGTAAAA TCAAAATTTA CAATAAATTC TACCAGTGGA 
GAAATAAAGG TTAAGGGCGA GCTGGATTAC GAAGACTGTA AATTATACGA GATTAATATT 
GATGCAGTGG ATAGAAGTTC ATTCCCCCTA GCAGGACACT GCAAAGTCAT AGTGAAACTT 
GTGGATGTAA ATGATAATGT GCCTGAGATG TCCATAACCT CCATTTTTTT GCCTATCAAA 
GAGGACGCTC CATTGGCGAC TGTCATCGCC CTGATTAGCG TGTCAGACCG TGATTCAGGC 
GCCAATGGGC AGGTGACCTG CTCCTTGACA CCCCACATCC CCTTCAAACT GGTGTCCACT 
TTCAAGAATT ACTATTCACT TGTGCTGGAC AGAGCTCTGG ACCGAGAGAC CATCGCTAAC 
TATGACGTGG TTGTGACCGC CCGCGATGGA GGCTCGCCCT CCCTGTGGGC CACGGCTAGC 
GTGTCTGTGG AGGTGGCTGA TGTGAACGAC AACGTGCCTG CGTTCGCGCA GCCTGAATAC 
ACTGTGTTTG TGAAGGAGAA TAATCCGCCT GGCGCGCACA TTTTCACGGT GTCAGCAGTG 
GACGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGAG GAGAGTGGGC 
GAGCGCTTGT TGTCGAGCTA TGTGTCTGTG CACGCCGAGA GCGGCAAGGT GTTCGCACTG 
CAGCCTCTGG ACCATGAGGA ACTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAATGAC 
AATGCACCCG CGCTCCTGGG GCCTCAGGGT GGAGGAGCAA TTATTGAGTT GTTGTCCCGG 
CCAGTGAGTT CCGGCCATGT GGTTGCGAAG GTGCGTGCAG TGGATGCGGA CTCTGGCTAC 
AACGCGTGGT TGTCTTACGA GCTGCAGCCA GCGACAGGCG CTGTGCGCAG CCCGTTCCGC 
GTGGGGTTAT ATACTGGTGA GATCAGCACC ACACGTGTTC TGGATGAAGC GGACATGCCA 
CGTCAACGCT TGTTGGTGCT GGTGAAGGAC CACGGCGAGC CACCGCTGAC AGCTACGGCC 
ACCTTTCTGG TGTCTCTAGT GGAGAACAGC CAGACACCGA AGGTCTCATC CAGAGTGTTG 
GTTGGAACCT CTGGTTCAGA CTCCACACTG ATAGATGTCA ACGTGTACCT GATCATCGCC 
ATCTGCGCGG TGTCCAGCTT GTTGGTGCTC ACCCTGCTGT TGTACACAGC GCTGCGCTGC 
TCCGCGACAC CCACAGATGG AGTCTGTGCT CCAGGGAAGC CCATGCTGGT GTGCTCTAGT 
GAGGTGGGGA CCTGGTCCTA CTCGCAGCAG AGGCGACAGA AGGTGTGCTC TGGAGAGGGT 
CCACCCAAGA CCGACCTCAT GGCCTTCAGC CCCAGCCTAC CTCAGGGACC CAGCTCTTCA 
GAGAATCCCC GACAGCCCAA CCCTGACTGG CGCTACTCTG CCTCGCTAAG AGCCGGCATG 
CACAGCTCTG TGCACCTGGA GGAGGCTGGC ATTCTACGGG CTGGTCCAGG AGGGCCTGAT 
CAACAGTGGC CAACAGTATC CAGTGCAACA CCAGAACCAG AGGCAGGAGA GGTGTCCCCT 
CCAGTGGGCG CTGGTGTCAA CAGCAACAGC TGGACCTTTA AATACGGACC CGGCAACCCC 
AAACAGCCCG GTCCCGGTGA GTTGCCAGAC AAATTCATTA TCCCAGGATC TCCTGCAATC 
ATCTCCATCC GGCAGGAGTC TGCTAACAAC CAAATTGACA AAAGCGATTT TATAACCTTC 
GGCAAAAAGG AGGAGACCAA GAAAAAGAAG AAAAAGAAGA AGGGTAACAA GACCCAGGAG 
AAAAAAGAGA AAGGGAACAG CACGACGGAC AACAGTGACC AGTGA