Patl1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Patl1
Entrez Gene ID	361736
Full Name	PAT1 homolog 1, processing body mRNA decay factor
Synonyms	Pat1b,RGD1305514
General protein information	Preferred Names PAT1 homolog 1, processing body mRNA decay factor Names protein PAT1 homolog 1 PAT1-like protein 1 protein PAT1 homolog b protein associated with topoisomerase II homolog 1
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 1 Map Location: 1q43

mRNA and Protein(s)

mRNA	Protein	Name
NM_001108520.2	NP_001101990.1	protein PAT1 homolog 1

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	PATL1	XP_003313081.1
Homo sapiens (human)	PATL1	NP_689929.2
Canis lupus familiaris (dog)	PATL1	XP_852101.1
Bos taurus (cattle)	PATL1	NP_001180136.1
Xenopus tropicalis (tropical clawed frog)	patl1	NP_001096293.1
	PATL1	XP_001089844.1
Mus musculus (house mouse)	Patl1	NP_766223.2
Rattus norvegicus (Norway rat)	Patl1	NP_001101990.1
Gallus gallus (chicken)	OSBP	XP_424206.4
Danio rerio (zebrafish)	patl1	NP_001076497.1

Gene Ontology
Bibliography

Related articles in PubMed

The role of disordered protein regions in the assembly of decapping complexes and RNP granules.
Jonas S, Izaurralde E
Genes & development27(24)2628-41(2013 Dec)

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanh?usser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)

The human Pat1b protein: a novel mRNA deadenylation factor identified by a new immunoprecipitation technique.
Totaro A, Renzi F, La Fata G, Mattioli C, Raabe M, Urlaub H, Achsel T
Nucleic acids research39(2)635-47(2011 Jan)

Distinct functions of maternal and somatic Pat1 protein paralogs.
Marnef A, Maldonado M, Bugaut A, Balasubramanian S, Kress M, Weil D, Standart N
RNA (New York, N.Y.)16(11)2094-107(2010 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Patl1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Patl1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa07678	NM_001108520.2 Latest version!	Rattus norvegicus PAT1 homolog 1, processing body mRNA decay factor (Patl1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$391.30 $559.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Patl1 ( NM_001108520.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001101990.1 Rattus norvegicus PAT1 homolog 1, processing body mRNA decay factor (Patl1), mRNA.

Price & Availability↑

CloneID	ORa07678
Clone ID Related Accession (Same CDS sequence)	NM_001108520.2
Accession Version	NM_001108520.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-09-16
Organism	Rattus norvegicus(Norway rat)
Product	protein PAT1 homolog 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC168974.1. On Sep 4, 2008 this sequence version replaced NM_001108520.1. ##Evidence-Data-START## Transcript exon combination :: BC168974.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END##

ATGTTCCGCT ACGAGTCTTT GGAGGATTGT CCTCTAGATG AAGATGAAGA TGCATTTCAG 
GGCCTGGGAG AAGAAGATGA AGAAATTGAT CAATTTAATG ATGATACATT TGGATCAGGT 
GCAGTTGATG ACGATTGGCA GGAAGCACAT GAGCGCCTGG CTGAGTTGGA AGAGAAGTTA 
CCTGTGGCAG CTGATGAACA AACAGGCAAT GGAGAGAGAG ATGAGATGGA CTTGTTGGGT 
GACCATGAGG AGAATCTAGC AGAAAGGCTC AGCAAGATGG TGATTGAAAA TGAGCTAGAA 
GATCCAGCTG TCATGAGGGC AGTGCAGACC AGGCCAGTTT TACAACCTCA ACCAGGAAGT 
CTGAATTCCA GCATCTGGGA TGGATCTGAA GTTCTGAGGC GAATCCGTGG ACCACTGCTT 
GCTCAGGAAA TGCCTACAGT GTCTGTATTA GAATATGCCT TGCCTCAGAG GCCCCCACAG 
GGCCCAGAAG ATGACCGGGA CCTTTCTGAG CGAGCTTTAC CAAGGCGGTC AACATCACCT 
ATCATTGGAA GTCCTCCTGT TAGAGCTGTT CCTATAGGCA CCCCACCTAA GCAGATGGCG 
GTTCCCAGCT TCAACCAACA GATTCTGTGT CCGAAGCCTG TTCATGTCCG GCCCCCAATG 
CCACCACGTT ATCCTGCTCC CTATGGTGAG AGGATGTCTC CAAACCAGCT CTGCAGTGTC 
CCGAACTCCT CCCTCCTGGG CCACCCTTTT CCTCCTAGTG TTCCTCCTGT ACTCAGTCCT 
CTGCAGAGAG CACAGCTTCT GGGAGGAGCA CAACTACAGC CTGGACGAAT GTCTCCCAGC 
CAGTTCGCAC GGGTCCCTGG ATTTGTTGGT AGCCCATTGG CTGCCATGAA TCCTAAGTTG 
CTACAAGGGC GTGTTGGGCA GATGCTTCCT CCAGCACCAG GCTTCCGTGC CTTCTTCAGT 
GCTCCACCCC CTGCCACGCC ACCTCCACAG CAACACCCTC CTGGCCCAGG ACCTCACCTC 
CAGAACCTAA GACCTCAGGC CCCAATGTTT AGACCAGACA CAACTCACCT TCATCCACAG 
CACCGGCGCC TGCTGCACCA GAGGCAGCTG CAAAGTAGAA ATCAGCATCG AAATCTCAAT 
GGTACTGGAG ACAGAGGAGG TCACCGGGTT AGTCATCAAG ATCATCTCCG GAAGGATCCA 
TATGCTAATC TAATGTTGCA GCGGGAAAAG GATTGGGTCT CTAAAATCCA AATGATGCAG 
CTGCAGAGCA CTGATCCCTA CCTGGATGAT TTCTATTACC AGAATTACTT TGAAAAGCTG 
GAGAAATCGT CAGCTGCTGA AGAAATGCAA GGTGACGGCC CTAAGAAGGA GCGCACCAAG 
CTCATCACCC CTCAGGTGGC CAGACTGGAG CACGCCTACA AGCCTGTGCA GTTTGAGGGC 
TCTTTGGGGA AACTTACTGT CTCTAGTGTG AATAATCCTC GGAAGATGAT AGATGCTGTT 
GTGACATCTC GGAGTGAGGA TGATGAAACA AAAGAAAAAC AAGTTCGGGA TAAAAGAAGA 
AAAACCCTTG TCATAATTGA GAAAACCTAT AGTTTACTCC TTGATGTGGA GGATTATGAA 
AGGCGCTATC TCCTAAGTCT AGAGGAAGAG CGGCCTGCCC TGACAGATGA AAGAAAGCAC 
AAAATCTGGA GCATGTATGA CAACCTGAGA GGCAAATTGC CTGGGCAAGA GAGGCCAAGT 
GATGACCACT TTGTACAAAT CATGTGTATC CGAAAAGGGA AGAGAATGGT TGCCCGCATT 
CTCCCTTTCC TCTCCACAGA GCAAGCAGCT GACATTCTCA TGGCAACTGC CAGGAACCTC 
CCTTTCCTTA TCAAGAAGGA CGCACAAGAT GAGGTGCTGC CATGCTTACT GAGTCCCTTC 
TCTCTCCTCC TCTATCATCT TCCTTCAGTG ACTGTCACCA GCCTTCTGCA ACAGCTAATG 
AACCTACCTC AAAGTGCAAC TGCACCAGCA CCCTCTAACT CTCACCTCAC TGCTGTGCTC 
CAGAACAAGT TTGGCTTGTC ACTGCTCCTA ATCCTCTTAA GCCGTGGGGA AGACCTACAT 
AGTTCAGATC CTACTGTAGA ATCAACGCAA AATAACCAGT GGACAGAGGT GATGTTCATG 
GCAACCCAAG AACTTCTACG GATCCCCCAA GCAGCCCTGG CCAAGCCAAT CTCTATACCC 
ACAAATCTAG TGTCTCTCTT TTCTCGCTAT GTTGACCGGC AGAAACTGAA CTTGCTGGAG 
ACAAAACTGC AGCTGGTTCA GGGGATGCGA TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001101990.1
CDS	106..2418
Translation	MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAVMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRPDTTHLHPQHRRLLHQRQLQSRNQHRNLNGTGDRGGHRVSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKSSAAEEMQGDGPKKERTKLITPQVARLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALTDERKHKIWSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLMNLPQSATAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLHSSDPTVESTQNNQWTEVMFMATQELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGMR

Target ORF information:

RefSeq Version	NM_001108520.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus PAT1 homolog 1, processing body mRNA decay factor (Patl1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001108520.2

ORF Insert Sequence:

ATGTTCCGCT ACGAGTCTTT GGAGGATTGT CCTCTAGATG AAGATGAAGA TGCATTTCAG 
GGCCTGGGAG AAGAAGATGA AGAAATTGAT CAATTTAATG ATGATACATT TGGATCAGGT 
GCAGTTGATG ACGATTGGCA GGAAGCACAT GAGCGCCTGG CTGAGTTGGA AGAGAAGTTA 
CCTGTGGCAG CTGATGAACA AACAGGCAAT GGAGAGAGAG ATGAGATGGA CTTGTTGGGT 
GACCATGAGG AGAATCTAGC AGAAAGGCTC AGCAAGATGG TGATTGAAAA TGAGCTAGAA 
GATCCAGCTG TCATGAGGGC AGTGCAGACC AGGCCAGTTT TACAACCTCA ACCAGGAAGT 
CTGAATTCCA GCATCTGGGA TGGATCTGAA GTTCTGAGGC GAATCCGTGG ACCACTGCTT 
GCTCAGGAAA TGCCTACAGT GTCTGTATTA GAATATGCCT TGCCTCAGAG GCCCCCACAG 
GGCCCAGAAG ATGACCGGGA CCTTTCTGAG CGAGCTTTAC CAAGGCGGTC AACATCACCT 
ATCATTGGAA GTCCTCCTGT TAGAGCTGTT CCTATAGGCA CCCCACCTAA GCAGATGGCG 
GTTCCCAGCT TCAACCAACA GATTCTGTGT CCGAAGCCTG TTCATGTCCG GCCCCCAATG 
CCACCACGTT ATCCTGCTCC CTATGGTGAG AGGATGTCTC CAAACCAGCT CTGCAGTGTC 
CCGAACTCCT CCCTCCTGGG CCACCCTTTT CCTCCTAGTG TTCCTCCTGT ACTCAGTCCT 
CTGCAGAGAG CACAGCTTCT GGGAGGAGCA CAACTACAGC CTGGACGAAT GTCTCCCAGC 
CAGTTCGCAC GGGTCCCTGG ATTTGTTGGT AGCCCATTGG CTGCCATGAA TCCTAAGTTG 
CTACAAGGGC GTGTTGGGCA GATGCTTCCT CCAGCACCAG GCTTCCGTGC CTTCTTCAGT 
GCTCCACCCC CTGCCACGCC ACCTCCACAG CAACACCCTC CTGGCCCAGG ACCTCACCTC 
CAGAACCTAA GACCTCAGGC CCCAATGTTT AGACCAGACA CAACTCACCT TCATCCACAG 
CACCGGCGCC TGCTGCACCA GAGGCAGCTG CAAAGTAGAA ATCAGCATCG AAATCTCAAT 
GGTACTGGAG ACAGAGGAGG TCACCGGGTT AGTCATCAAG ATCATCTCCG GAAGGATCCA 
TATGCTAATC TAATGTTGCA GCGGGAAAAG GATTGGGTCT CTAAAATCCA AATGATGCAG 
CTGCAGAGCA CTGATCCCTA CCTGGATGAT TTCTATTACC AGAATTACTT TGAAAAGCTG 
GAGAAATCGT CAGCTGCTGA AGAAATGCAA GGTGACGGCC CTAAGAAGGA GCGCACCAAG 
CTCATCACCC CTCAGGTGGC CAGACTGGAG CACGCCTACA AGCCTGTGCA GTTTGAGGGC 
TCTTTGGGGA AACTTACTGT CTCTAGTGTG AATAATCCTC GGAAGATGAT AGATGCTGTT 
GTGACATCTC GGAGTGAGGA TGATGAAACA AAAGAAAAAC AAGTTCGGGA TAAAAGAAGA 
AAAACCCTTG TCATAATTGA GAAAACCTAT AGTTTACTCC TTGATGTGGA GGATTATGAA 
AGGCGCTATC TCCTAAGTCT AGAGGAAGAG CGGCCTGCCC TGACAGATGA AAGAAAGCAC 
AAAATCTGGA GCATGTATGA CAACCTGAGA GGCAAATTGC CTGGGCAAGA GAGGCCAAGT 
GATGACCACT TTGTACAAAT CATGTGTATC CGAAAAGGGA AGAGAATGGT TGCCCGCATT 
CTCCCTTTCC TCTCCACAGA GCAAGCAGCT GACATTCTCA TGGCAACTGC CAGGAACCTC 
CCTTTCCTTA TCAAGAAGGA CGCACAAGAT GAGGTGCTGC CATGCTTACT GAGTCCCTTC 
TCTCTCCTCC TCTATCATCT TCCTTCAGTG ACTGTCACCA GCCTTCTGCA ACAGCTAATG 
AACCTACCTC AAAGTGCAAC TGCACCAGCA CCCTCTAACT CTCACCTCAC TGCTGTGCTC 
CAGAACAAGT TTGGCTTGTC ACTGCTCCTA ATCCTCTTAA GCCGTGGGGA AGACCTACAT 
AGTTCAGATC CTACTGTAGA ATCAACGCAA AATAACCAGT GGACAGAGGT GATGTTCATG 
GCAACCCAAG AACTTCTACG GATCCCCCAA GCAGCCCTGG CCAAGCCAAT CTCTATACCC 
ACAAATCTAG TGTCTCTCTT TTCTCGCTAT GTTGACCGGC AGAAACTGAA CTTGCTGGAG 
ACAAAACTGC AGCTGGTTCA GGGGATGCGA TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The role of disordered protein regions in the assembly of decapping complexes and RNP granules.
Genes & development27(24)2628-41(2013 Dec)
Jonas S,Izaurralde E

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Cell149(6)1393-406(2012 Jun)
Castello A,Fischer B,Eichelbaum K,Horos R,Beckmann BM,Strein C,Davey NE,Humphreys DT,Preiss T,Steinmetz LM,Krijgsveld J,Hentze MW

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Molecular cell46(5)674-90(2012 Jun)
Baltz AG,Munschauer M,Schwanh?usser B,Vasile A,Murakawa Y,Schueler M,Youngs N,Penfold-Brown D,Drew K,Milek M,Wyler E,Bonneau R,Selbach M,Dieterich C,Landthaler M

The human Pat1b protein: a novel mRNA deadenylation factor identified by a new immunoprecipitation technique.
Nucleic acids research39(2)635-47(2011 Jan)
Totaro A,Renzi F,La Fata G,Mattioli C,Raabe M,Urlaub H,Achsel T

Distinct functions of maternal and somatic Pat1 protein paralogs.
RNA (New York, N.Y.)16(11)2094-107(2010 Nov)
Marnef A,Maldonado M,Bugaut A,Balasubramanian S,Kress M,Weil D,Standart N

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Patl1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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