Smarce1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Smarce1
Entrez Gene ID	303518
Full Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Synonyms	BAF57,RGD1304726
General protein information	Preferred Names SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 Names SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 BRG1-associated factor 57
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 10 Map Location: 10q31

mRNA and Protein(s)

mRNA	Protein	Name
NM_001024993.1	NP_001020164.1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
XM_017597317.1	XP_017452806.1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

Pathways from BioSystems

Homologies

Danio rerio (zebrafish)	smarce1	NP_958455.2
Caenorhabditis elegans (roundworm)	swsn-3	NP_497613.2
Xenopus tropicalis (tropical clawed frog)	smarce1	NP_001005436.1
Homo sapiens (human)	SMARCE1	NP_003070.3
	SMARCE1	XP_001099623.2
Rattus norvegicus (Norway rat)	Smarce1	NP_001020164.1
Gallus gallus (chicken)	SMARCE1	NP_001006335.2
Canis lupus familiaris (dog)	SMARCE1	XP_851010.1
Bos taurus (cattle)	SMARCE1	NP_001092586.1
Mus musculus (house mouse)	Smarce1	NP_065643.1
Pan troglodytes (chimpanzee)	SMARCE1	XP_511478.2
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP001994	XP_321065.4

Gene Ontology
Bibliography

Related articles in PubMed

The spectrum of SWI/SNF mutations, ubiquitous in human cancers.
Shain AH, Pollack JR
PloS one8(1)e55119(2013)

Insights into role of bromodomain, testis-specific (Brdt) in acetylated histone H4-dependent chromatin remodeling in mammalian spermiogenesis.
Dhar S, Thota A, Rao MR
The Journal of biological chemistry287(9)6387-405(2012 Feb)

The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity.
Rapicavoli NA, Poth EM, Zhu H, Blackshaw S
Neural development632(2011 Sep)

ATP-dependent chromatin remodeling: genetics, genomics and mechanisms.
Hargreaves DC, Crabtree GR
Cell research21(3)396-420(2011 Mar)

Neuregulin-1 modulates the differentiation of neural stem cells in vitro through an interaction with the Swi/Snf complex.
Pirotte D, Wislet-Gendebien S, Cloes JM, Rogister B
Molecular and cellular neurosciences43(1)72-80(2010 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The N terminus of Brdt is involved in the recognition of Smarce1 as well as in the reorganization of hyperacetylated round spermatid chromatin.
Title: Insights into role of bromodomain, testis-specific (Brdt) in acetylated histone H4-dependent chromatin remodeling in mammalian spermiogenesis.

The following Smarce1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Smarce1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa06958	NM_001024993.1 Latest version!	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	5-7	$223.30 $319.00
ORa57360	XM_017597317.1 Latest version!	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Smarce1 ( NM_001024993.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001020164.1 Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA.

Price & Availability↑

CloneID	ORa06958
Clone ID Related Accession (Same CDS sequence)	NM_001024993.1
Accession Version	NM_001024993.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1131bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-06-07
Organism	Rattus norvegicus(Norway rat)
Product	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC092210.1. On Jun 25, 2005 this sequence version replaced XM_220924.3. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC092210.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END##

ATGTCAAAAA GACCATCTTA TGCCCCACCT CCCACCCCAG CTCCTGCAAC AGCGTCCTCC 
GGCATTACAA TCCCAAAGCC TCCAAAGCCA CCAGATAAGC CGCTCATGCC CTACATGAGG 
TACAGCAGAA AGGTCTGGGA CCAAGTAAAG GCTTCCAACC CTGACCTAAA GTTGTGGGAG 
ATTGGCAAGA TTATTGGTGG CATGTGGCGA GATCTCACTG ATGAAGAGAA ACAAGAATAT 
TTAAACGAGT ACGAAGCAGA AAAGATAGAG TACAATGAAT CTATGAAGGC CTATCACAAT 
TCCCCTGCAT ACCTTGCATA TATTAATGCA AAAAGTCGTG CGGAAGCTGC ATTAGAGGAA 
GAAAGTCGAC AGAGACAGTC GCGCATGGAG AAAGGAGAGC CTTACATGAG CATTCAGCCT 
GCGGAGGACC CAGACGATTA TGATGACGGC TTTTCAATGA AGCATACAGC CACTGCCCGT 
TTCCAGAGAA ACCACCGCCT CATCAGTGAG ATCCTCAGTG AGAGTGTGGT ACCTGATGTG 
CGGTCGGTTG TCACAACAGC TAGAATGCAA GTCCTCAAGC GACAGGTCCA GTCTTTAATG 
GTTCATCAGC GGAAACTAGA AGCCGAGCTT CTTCAGATAG AGGAACGACA CCAGGAAAAG 
AAGAGGAAAT TCCTGGAAAG CACAGACTCC TTTAACAATG AGCTTAAAAG GCTGTGTGGT 
CTGAAGGTGG AAGTGGACAT GGAGAAGATT GCAGCAGAGA TCGCACAGGC GGAGGAGCAG 
GCCCGCAAAA GGCAGGAGGA GAGGGAGAAG GAGGCAGCCG AGCAAGCTGA GCGCAGCCAG 
GGCAGCATCG CCCCCGAGGA AGAGCAAGTG GCGAACAAAG CCGAGGAGAA GAAGGATGAG 
GAGAACATCC CGATGGAGAC AGAGGAGACA CACCTTGAAG ACACTGCGGA GAACCAGCAG 
AATGGTGAAG AAGGCACATC TACTCCTGAG GACAAGGAGA GTGGGCAGGA GGGGGTTGAC 
AGCATGGAGG TGGAAGGGAC CAGTGACAGT AACACCGGCT CAGAGAGCAA CAGCGCAACG 
GTGGAGGAGC CGCCCACGGA CCCTGTGCCA GAAGACGAGA AGAAGGAATA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001020164.1
CDS	103..1233
Translation	MSKRPSYAPPPTPAPATASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQGSIAPEEEQVANKAEEKKDEENIPMETEETHLEDTAENQQNGEEGTSTPEDKESGQEGVDSMEVEGTSDSNTGSESNSATVEEPPTDPVPEDEKKE

Target ORF information:

RefSeq Version	NM_001024993.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001024993.1

ORF Insert Sequence:

ATGTCAAAAA GACCATCTTA TGCCCCACCT CCCACCCCAG CTCCTGCAAC AGCGTCCTCC 
GGCATTACAA TCCCAAAGCC TCCAAAGCCA CCAGATAAGC CGCTCATGCC CTACATGAGG 
TACAGCAGAA AGGTCTGGGA CCAAGTAAAG GCTTCCAACC CTGACCTAAA GTTGTGGGAG 
ATTGGCAAGA TTATTGGTGG CATGTGGCGA GATCTCACTG ATGAAGAGAA ACAAGAATAT 
TTAAACGAGT ACGAAGCAGA AAAGATAGAG TACAATGAAT CTATGAAGGC CTATCACAAT 
TCCCCTGCAT ACCTTGCATA TATTAATGCA AAAAGTCGTG CGGAAGCTGC ATTAGAGGAA 
GAAAGTCGAC AGAGACAGTC GCGCATGGAG AAAGGAGAGC CTTACATGAG CATTCAGCCT 
GCGGAGGACC CAGACGATTA TGATGACGGC TTTTCAATGA AGCATACAGC CACTGCCCGT 
TTCCAGAGAA ACCACCGCCT CATCAGTGAG ATCCTCAGTG AGAGTGTGGT ACCTGATGTG 
CGGTCGGTTG TCACAACAGC TAGAATGCAA GTCCTCAAGC GACAGGTCCA GTCTTTAATG 
GTTCATCAGC GGAAACTAGA AGCCGAGCTT CTTCAGATAG AGGAACGACA CCAGGAAAAG 
AAGAGGAAAT TCCTGGAAAG CACAGACTCC TTTAACAATG AGCTTAAAAG GCTGTGTGGT 
CTGAAGGTGG AAGTGGACAT GGAGAAGATT GCAGCAGAGA TCGCACAGGC GGAGGAGCAG 
GCCCGCAAAA GGCAGGAGGA GAGGGAGAAG GAGGCAGCCG AGCAAGCTGA GCGCAGCCAG 
GGCAGCATCG CCCCCGAGGA AGAGCAAGTG GCGAACAAAG CCGAGGAGAA GAAGGATGAG 
GAGAACATCC CGATGGAGAC AGAGGAGACA CACCTTGAAG ACACTGCGGA GAACCAGCAG 
AATGGTGAAG AAGGCACATC TACTCCTGAG GACAAGGAGA GTGGGCAGGA GGGGGTTGAC 
AGCATGGAGG TGGAAGGGAC CAGTGACAGT AACACCGGCT CAGAGAGCAA CAGCGCAACG 
GTGGAGGAGC CGCCCACGGA CCCTGTGCCA GAAGACGAGA AGAAGGAATA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Smarce1 ( XM_017597317.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_017452806.1 Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa57360
Clone ID Related Accession (Same CDS sequence)	XM_017597317.1
Accession Version	XM_017597317.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1371bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005109.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAA GACCATCTTA TGCCCCACCT CCCACCCCAG CTCCTGCAAC ACAAATGCCC 
AGCACACCAG GGTTTGTGGG ATACAATCCA TACAGTCATC TCGCCTACAA CAACTACAGG 
CTGGGAGGGA ACCCGGGCAC CAACAGCCGG GTCACGGCGT CCTCCGGCAT TACAATCCCA 
AAGCCTCCAA AGCCACCAGA TAAGCCGCTC ATGCCCTACA TGAGGTACAG CAGAAAGGTC 
TGGGACCAAG TAAAGGCTTC CAACCCTGAC CTAAAGTTGT GGGAGATTGG CAAGATTATT 
GGTGGCATGT GGCGAGATCT CACTGATGAA GAGAAACAAG AATATTTAAA CGAGTACGAA 
GCAGAAAAGA TAGAGTACAA TGAATCTATG AAGGCCTATC ACAATTCCCC TGCATACCTT 
GCATATATTA ATGCAAAAAG TCGTGCGGAA GCTGCATTAG AGGAAGAAAG TCGACAGAGA 
CAGTCGCGCA TGGAGAAAGG AGAGCCTTAC ATGAGCATTC AGCCTGCGGA GGACCCAGAC 
GATTATGATG ACGGCTTTTC AATGAAGCAT ACAGCCACTG CCCGTTTCCA GAGAAACCAC 
CGCCTCATCA GTGAGATCCT CAGTGAGAGT GTGGTACCTG ATGTGCGGTC GGTTGTCACA 
ACAGCTAGAA TGCAAGTCCT CAAGCGACAG GTCCAGTCTT TAATGGTTCA TCAGCGGAAA 
CTAGAAGCCG AGCTTCTTCA GATAGAGGAA CGACACCAGG AAAAGAAGAG GAAATTCCTG 
GAAAGCACAG ACTCCTTTAA CAATGAGCTT AAAAGGCTGT GTGGTCTGAA GGTGGAAGTG 
GACATGGAGA AGATTGCAGC AGAGATCGCA CAGGCGGAGG AGCAGGCCCG CAAAAGGCAG 
GAGGAGAGGG AGAAGGAGGC AGCCGAGCAA GCTGAGCGCA GCCAGGGCAG CATCGCCCCC 
GAGGAAGAGC AAGTGGCGAA CAAAGCCGAG GAGAAGAAGG ATGAGGAGAA CATCCCGATG 
GAGACAGAGG AGACACACCT TGAAGACACT GCGGAGAACC AGCAGAATGG TGAAGAAGGC 
ACATCTACTC CTGAGGACAA GGAGAGTGGG CAGGAGGGGG TTGACAGCAT GGAGGTGGAA 
GGGACCAGTG ACAGTAACAC CGGCTCAGAG AGCAACAGCG CAACGGTGGA GGAGCCGCCC 
ACGGACCCTG GCCAGAAGCC GAGAAGAAGG AATAAATGTG GCGTTGTTTT ATGTGACCTA 
AAACTGTTTT TAAATGAAAA AAAAAATGTG TTGTTTTTGG TTTTAATGGT GTTATGTGGT 
CTGTGTATTA TTTCCATTGA TACCGTGAAG GTCTTCAATA GCATAGCCTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017452806.1
CDS	1034..2404
Translation	MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQGSIAPEEEQVANKAEEKKDEENIPMETEETHLEDTAENQQNGEEGTSTPEDKESGQEGVDSMEVEGTSDSNTGSESNSATVEEPPTDPGQKPRRRNKCGVVLCDLKLFLNEKKNVLFLVLMVLCGLCIISIDTVKVFNSIA

Target ORF information:

RefSeq Version	XM_017597317.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017597317.1

ORF Insert Sequence:

ATGTCAAAAA GACCATCTTA TGCCCCACCT CCCACCCCAG CTCCTGCAAC ACAAATGCCC 
AGCACACCAG GGTTTGTGGG ATACAATCCA TACAGTCATC TCGCCTACAA CAACTACAGG 
CTGGGAGGGA ACCCGGGCAC CAACAGCCGG GTCACGGCGT CCTCCGGCAT TACAATCCCA 
AAGCCTCCAA AGCCACCAGA TAAGCCGCTC ATGCCCTACA TGAGGTACAG CAGAAAGGTC 
TGGGACCAAG TAAAGGCTTC CAACCCTGAC CTAAAGTTGT GGGAGATTGG CAAGATTATT 
GGTGGCATGT GGCGAGATCT CACTGATGAA GAGAAACAAG AATATTTAAA CGAGTACGAA 
GCAGAAAAGA TAGAGTACAA TGAATCTATG AAGGCCTATC ACAATTCCCC TGCATACCTT 
GCATATATTA ATGCAAAAAG TCGTGCGGAA GCTGCATTAG AGGAAGAAAG TCGACAGAGA 
CAGTCGCGCA TGGAGAAAGG AGAGCCTTAC ATGAGCATTC AGCCTGCGGA GGACCCAGAC 
GATTATGATG ACGGCTTTTC AATGAAGCAT ACAGCCACTG CCCGTTTCCA GAGAAACCAC 
CGCCTCATCA GTGAGATCCT CAGTGAGAGT GTGGTACCTG ATGTGCGGTC GGTTGTCACA 
ACAGCTAGAA TGCAAGTCCT CAAGCGACAG GTCCAGTCTT TAATGGTTCA TCAGCGGAAA 
CTAGAAGCCG AGCTTCTTCA GATAGAGGAA CGACACCAGG AAAAGAAGAG GAAATTCCTG 
GAAAGCACAG ACTCCTTTAA CAATGAGCTT AAAAGGCTGT GTGGTCTGAA GGTGGAAGTG 
GACATGGAGA AGATTGCAGC AGAGATCGCA CAGGCGGAGG AGCAGGCCCG CAAAAGGCAG 
GAGGAGAGGG AGAAGGAGGC AGCCGAGCAA GCTGAGCGCA GCCAGGGCAG CATCGCCCCC 
GAGGAAGAGC AAGTGGCGAA CAAAGCCGAG GAGAAGAAGG ATGAGGAGAA CATCCCGATG 
GAGACAGAGG AGACACACCT TGAAGACACT GCGGAGAACC AGCAGAATGG TGAAGAAGGC 
ACATCTACTC CTGAGGACAA GGAGAGTGGG CAGGAGGGGG TTGACAGCAT GGAGGTGGAA 
GGGACCAGTG ACAGTAACAC CGGCTCAGAG AGCAACAGCG CAACGGTGGA GGAGCCGCCC 
ACGGACCCTG GCCAGAAGCC GAGAAGAAGG AATAAATGTG GCGTTGTTTT ATGTGACCTA 
AAACTGTTTT TAAATGAAAA AAAAAATGTG TTGTTTTTGG TTTTAATGGT GTTATGTGGT 
CTGTGTATTA TTTCCATTGA TACCGTGAAG GTCTTCAATA GCATAGCCTA A