Plxdc1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Plxdc1
Entrez Gene ID	303505
Full Name	plexin domain containing 1
Synonyms	Arl12,Tem7
General protein information	Preferred Names plexin domain containing 1 Names plexin domain-containing protein 1 ADP-ribosylation factor-like 12 tumor endothelial marker7
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 10 Map Location: 10q31

mRNA and Protein(s)

mRNA	Protein	Name
NM_001107046.1	NP_001100516.1	plexin domain-containing protein 1 precursor

Pathways from BioSystems

Homologies

Gallus gallus (chicken)	PLXDC1	XP_001235084.3
Bos taurus (cattle)	PLXDC1	NP_001092547.1
Mus musculus (house mouse)	Plxdc1	NP_082475.3
Homo sapiens (human)	PLXDC1	NP_065138.2
Pan troglodytes (chimpanzee)	PLXDC1	XP_001172591.1
Xenopus tropicalis (tropical clawed frog)	plxdc1	XP_004918728.1
Canis lupus familiaris (dog)	PLXDC1	XP_548152.2
Rattus norvegicus (Norway rat)	Plxdc1	NP_001100516.1

Gene Ontology
Bibliography

Related articles in PubMed

Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins.
Ghai R, Bugarcic A, Liu H, Norwood SJ, Skeldal S, Coulson EJ, Li SS, Teasdale RD, Collins BM
Proceedings of the National Academy of Sciences of the United States of America110(8)E643-52(2013 Feb)

Expression profile of tumor endothelial marker 7 and a putative ligand in the rat spinal cord and dorsal root ganglion.
Wang L, Lee KY, Park HT, Kang DS
Asian spine journal1(2)65-74(2007 Dec)

Expression of tumor endothelial marker 7 mRNA and protein in the dorsal root ganglion neurons of the rat.
Lee HK, Kang DS, Seo IA, Choi EJ, Park HT, Park JI
Neuroscience letters402(1-2)71-5(2006 Jul)

Identification of the basement membrane protein nidogen as a candidate ligand for tumor endothelial marker 7 in vitro and in vivo.
Lee HK, Seo IA, Park HK, Park HT
FEBS letters580(9)2253-7(2006 Apr)

Cloning, characterization and neuronal expression profiles of tumor endothelial marker 7 in the rat brain.
Lee HK, Bae HR, Park HK, Seo IA, Lee EY, Suh DJ, Park HT
Brain research. Molecular brain research136(1-2)189-98(2005 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

TEM7 mRNA expression was localized to the neuronal population of the sensory ganglion. Immunohistochemical analysis on TEM protein with specific antibodies further supported the spatial expression patterns of TEM7 mRNA in the DRG.
Title: Expression of tumor endothelial marker 7 mRNA and protein in the dorsal root ganglion neurons of the rat.

The following Plxdc1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Plxdc1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa02777	NM_001107046.1 Latest version!	Rattus norvegicus plexin domain containing 1 (Plxdc1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$293.30 $419.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Plxdc1 ( NM_001107046.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001100516.1 Rattus norvegicus plexin domain containing 1 (Plxdc1), mRNA.

Price & Availability↑

CloneID	ORa02777
Clone ID Related Accession (Same CDS sequence)	NM_001107046.1
Accession Version	NM_001107046.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1503bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-10-01
Organism	Rattus norvegicus(Norway rat)
Product	plexin domain-containing protein 1 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473948.1. On or before Oct 4, 2007 this sequence version replaced XM_220907.4, XM_001081386.1. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END##

ATGCGGGCTC AGCTCTGGTT GCTGCAGCTG CTGCTACTCT GCGGGACCGC GCGCGCGCTC 
AGTCCCGCAA CACCCGCAGG TCACGATGAA AGGCAAGGCT CTGCATGGAC TGCCAAGAGG 
ACCAGGCAAG GCTGGAATCG GAGGGTCCGA GAGAGCCCTG GGCAGGTGTT AAAGCCAGGC 
AAGACCCAGC TGAGCCAGGA CCTGGGTGGA GACTCCCTGG CCATTGACAC ACTTCCGGAC 
AACAGGACTA GGGTGGTGGA GGACAACCAT AACTACTATG TTTCCCGTGT CTATGGCCCT 
GGTGAGCAAC GAACAAGAGA TCTGTGGGTA GACCTGAGTG TAGCCAACCG GAACCACGTG 
AAGGTCCACA GGATCCTCTC AAGTTCTCAC CGACAGGCTT CGAGAGTGGT CTTGTCCTTT 
GATTTCCCTT TCTATGGGCA TCCTTTGCGG CAGATCACCA TAGCAACCGG AGGCTTCATC 
TTCATGGGGG ACGTCCTCCA CCGGATGCTC ACAGCTACTC AGTATGTGGC ACCCCTGATG 
GCCAACTTCA ACCCCGGCTA CTCAGACAAC TCCACAGTCG CTTACTTTGA TAATGGGACC 
GTGTTTGTGG TTCAGTGGGA CCACGTTTAC CTCCAGGGCC GGGAGGACAG GGGTAGCTTC 
ACCTTCCAGG CAGCCCTTCA CCAAGATGGC CGCATTGTCT TTGGCTACAA AGAGATCCCC 
ATGGCTGTCC TGGACATCAG CTCTGCCCAG CACCCTGTCA AAGCAGGCCT GTCTGATGCT 
TTCATGATTC TCAATTCATC GCCAGAGGTG CCAGAGTCTC GGAGACGGAC TATCTTCGAA 
TACCACCGTG TGGAACTGGA CTCCAGCAAG ATCACCACCA CCTCGGCTGT GGAGTTCACC 
CCATTGCCAA CCTGCCTCCA GCATCAGAGT TGCGATGCTT GCATGTCCTC GAACCTGACC 
TTCAACTGCA GCTGGTGCTA TGTCCTGCAG AGATGTTCCA GTGGCTTTGA CCGCTACCGC 
CAAGAATGGC TGACCTATGG CTGTGCCCAG GAGGCAGAAG GCAAGACATG CGAGCACTTC 
CAAGATGAGG GCCACTACTC AGCCTCCCCT GACAGCTCCT TTAGCCCCTC TGATGGCGGC 
TCCACCACCT CTTCCTCCCT CTTCATCGAC AGCCTCACCA CAGAAGATGA CACCAAGTTG 
AATCCCTATG CAGAAGGAGA CGGCCTTCCA GACAACTCGT CCCCAAAGAC CAAGGGTCCG 
CCCGTGCACC TGGGCACCAT CGTGGGCATC GTGCTAGCTG TGCTCCTGGT AGCGGCCATC 
ATCCTGGCTG GGATTTACAT CAGCGGCCAC CCTAACTCCA ATGCCGCACT CTTCTTCATT 
GAGCGGCGAC CTCACCACTG GCCAGCCATG AAGTTCCACA ACCACCCCAA CCACTCCACC 
TACACAGAGG TGGAGCCCTC GGGCCATGAG AAGGAGGGCT TCGTGGAGGC GGAGCAGTGC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001100516.1
CDS	127..1629
Translation	MRAQLWLLQLLLLCGTARALSPATPAGHDERQGSAWTAKRTRQGWNRRVRESPGQVLKPGKTQLSQDLGGDSLAIDTLPDNRTRVVEDNHNYYVSRVYGPGEQRTRDLWVDLSVANRNHVKVHRILSSSHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVLHRMLTATQYVAPLMANFNPGYSDNSTVAYFDNGTVFVVQWDHVYLQGREDRGSFTFQAALHQDGRIVFGYKEIPMAVLDISSAQHPVKAGLSDAFMILNSSPEVPESRRRTIFEYHRVELDSSKITTTSAVEFTPLPTCLQHQSCDACMSSNLTFNCSWCYVLQRCSSGFDRYRQEWLTYGCAQEAEGKTCEHFQDEGHYSASPDSSFSPSDGGSTTSSSLFIDSLTTEDDTKLNPYAEGDGLPDNSSPKTKGPPVHLGTIVGIVLAVLLVAAIILAGIYISGHPNSNAALFFIERRPHHWPAMKFHNHPNHSTYTEVEPSGHEKEGFVEAEQC

Target ORF information:

RefSeq Version	NM_001107046.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus plexin domain containing 1 (Plxdc1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001107046.1

ORF Insert Sequence:

ATGCGGGCTC AGCTCTGGTT GCTGCAGCTG CTGCTACTCT GCGGGACCGC GCGCGCGCTC 
AGTCCCGCAA CACCCGCAGG TCACGATGAA AGGCAAGGCT CTGCATGGAC TGCCAAGAGG 
ACCAGGCAAG GCTGGAATCG GAGGGTCCGA GAGAGCCCTG GGCAGGTGTT AAAGCCAGGC 
AAGACCCAGC TGAGCCAGGA CCTGGGTGGA GACTCCCTGG CCATTGACAC ACTTCCGGAC 
AACAGGACTA GGGTGGTGGA GGACAACCAT AACTACTATG TTTCCCGTGT CTATGGCCCT 
GGTGAGCAAC GAACAAGAGA TCTGTGGGTA GACCTGAGTG TAGCCAACCG GAACCACGTG 
AAGGTCCACA GGATCCTCTC AAGTTCTCAC CGACAGGCTT CGAGAGTGGT CTTGTCCTTT 
GATTTCCCTT TCTATGGGCA TCCTTTGCGG CAGATCACCA TAGCAACCGG AGGCTTCATC 
TTCATGGGGG ACGTCCTCCA CCGGATGCTC ACAGCTACTC AGTATGTGGC ACCCCTGATG 
GCCAACTTCA ACCCCGGCTA CTCAGACAAC TCCACAGTCG CTTACTTTGA TAATGGGACC 
GTGTTTGTGG TTCAGTGGGA CCACGTTTAC CTCCAGGGCC GGGAGGACAG GGGTAGCTTC 
ACCTTCCAGG CAGCCCTTCA CCAAGATGGC CGCATTGTCT TTGGCTACAA AGAGATCCCC 
ATGGCTGTCC TGGACATCAG CTCTGCCCAG CACCCTGTCA AAGCAGGCCT GTCTGATGCT 
TTCATGATTC TCAATTCATC GCCAGAGGTG CCAGAGTCTC GGAGACGGAC TATCTTCGAA 
TACCACCGTG TGGAACTGGA CTCCAGCAAG ATCACCACCA CCTCGGCTGT GGAGTTCACC 
CCATTGCCAA CCTGCCTCCA GCATCAGAGT TGCGATGCTT GCATGTCCTC GAACCTGACC 
TTCAACTGCA GCTGGTGCTA TGTCCTGCAG AGATGTTCCA GTGGCTTTGA CCGCTACCGC 
CAAGAATGGC TGACCTATGG CTGTGCCCAG GAGGCAGAAG GCAAGACATG CGAGCACTTC 
CAAGATGAGG GCCACTACTC AGCCTCCCCT GACAGCTCCT TTAGCCCCTC TGATGGCGGC 
TCCACCACCT CTTCCTCCCT CTTCATCGAC AGCCTCACCA CAGAAGATGA CACCAAGTTG 
AATCCCTATG CAGAAGGAGA CGGCCTTCCA GACAACTCGT CCCCAAAGAC CAAGGGTCCG 
CCCGTGCACC TGGGCACCAT CGTGGGCATC GTGCTAGCTG TGCTCCTGGT AGCGGCCATC 
ATCCTGGCTG GGATTTACAT CAGCGGCCAC CCTAACTCCA ATGCCGCACT CTTCTTCATT 
GAGCGGCGAC CTCACCACTG GCCAGCCATG AAGTTCCACA ACCACCCCAA CCACTCCACC 
TACACAGAGG TGGAGCCCTC GGGCCATGAG AAGGAGGGCT TCGTGGAGGC GGAGCAGTGC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins.
Proceedings of the National Academy of Sciences of the United States of America110(8)E643-52(2013 Feb)
Ghai R,Bugarcic A,Liu H,Norwood SJ,Skeldal S,Coulson EJ,Li SS,Teasdale RD,Collins BM

Expression profile of tumor endothelial marker 7 and a putative ligand in the rat spinal cord and dorsal root ganglion.
Asian spine journal1(2)65-74(2007 Dec)
Wang L,Lee KY,Park HT,Kang DS

Expression of tumor endothelial marker 7 mRNA and protein in the dorsal root ganglion neurons of the rat.
Neuroscience letters402(1-2)71-5(2006 Jul)
Lee HK,Kang DS,Seo IA,Choi EJ,Park HT,Park JI

Identification of the basement membrane protein nidogen as a candidate ligand for tumor endothelial marker 7 in vitro and in vivo.
FEBS letters580(9)2253-7(2006 Apr)
Lee HK,Seo IA,Park HK,Park HT

Cloning, characterization and neuronal expression profiles of tumor endothelial marker 7 in the rat brain.
Brain research. Molecular brain research136(1-2)189-98(2005 May)
Lee HK,Bae HR,Park HK,Seo IA,Lee EY,Suh DJ,Park HT