Rnf39 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Rnf39
Entrez Gene ID	171387
Full Name	ring finger protein 39
Synonyms	Hzfw1,Lirf
General protein information	Preferred Names ring finger protein 39 Names RING finger protein 39 LTP-induced RING finger protein
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 20 Map Location: 20p12
Summary	expression is induced during long-term potentiation; may play a role in synaptic plasticity [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_134374.2	NP_599201.1	RING finger protein 39

Pathways from BioSystems

Homologies

Bos taurus (cattle)	RNF39	XP_003587753.2
Homo sapiens (human)	RNF39	NP_079512.2
Pan troglodytes (chimpanzee)	RNF39	NP_001107640.1
	RNF39	NP_001108418.1
Canis lupus familiaris (dog)	RNF39	XP_545466.2
Rattus norvegicus (Norway rat)	Rnf39	NP_599201.1
Mus musculus (house mouse)	Rnf39	NP_001093102.1

Gene Ontology
Bibliography

Related articles in PubMed

The genomic sequence and comparative analysis of the rat major histocompatibility complex.
Hurt P, Walter L, Sudbrak R, Klages S, M?ller I, Shiina T, Inoko H, Lehrach H, G?nther E, Reinhardt R, Himmelbauer H
Genome research14(4)631-9(2004 Apr)

LIRF, a gene induced during hippocampal long-term potentiation as an immediate-early gene, encodes a novel RING finger protein.
Matsuo R, Asada A, Fujitani K, Inokuchi K
Biochemical and biophysical research communications289(2)479-84(2001 Nov)

Identification and cataloging of genes induced by long-lasting long-term potentiation in awake rats.
Matsuo R, Murayama A, Saitoh Y, Sakaki Y, Inokuchi K
Journal of neurochemistry74(6)2239-49(2000 Jun)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Rnf39 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Rnf39 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa01226	NM_134374.2 Latest version!	Rattus norvegicus ring finger protein 39 (Rnf39), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$188.30 $269.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Rnf39 ( NM_134374.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_599201.1 Rattus norvegicus ring finger protein 39 (Rnf39), mRNA.

Price & Availability↑

CloneID	ORa01226
Clone ID Related Accession (Same CDS sequence)	NM_134374.2
Accession Version	NM_134374.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1059bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-10-18
Organism	Rattus norvegicus(Norway rat)
Product	RING finger protein 39
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX883051.1. On Oct 17, 2009 this sequence version replaced NM_134374.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AB070897.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2689595, SAMEA2689598 [ECO:0000348] ##Evidence-Data-END##

ATGGAGGTTC CCGAGCTGGG CCCGGGGTTG GTGGAGCGTC TGGAGCAGCT GGCGACGTGT 
CCGCTGTGCG GGGGCCCCTT CGAGGACCCA GTCCTGCTGG CGTGCGAGCA CAGCTTCTGC 
CGTTCGTGCT TGGCGCGCTG CTGGGGGTCC CCGGCGGCGC CCGGCTCGGA GGAGGCGACC 
CCGTCCTGCC CCTGCTGTGG TCAGCCGTGC CCCAGACGCA GCCTGAGGTC TAACGTGCGA 
CTTGCAGTGG AGGTGCGCAT CAGCCGCGGG CTGCGTGAGA AACTGGCCGA GCCCGGGGCC 
CGGACCGGGA GACGACGCGG CGGCCGCATC CCCACCATGG GCTGCCTGGA TCCCCAAGGA 
GAGGATATGA GAAAGACATG GAGACGATTC GATGTCCCGG TACCCAAGTC ATCTAACTCA 
GAGGAGGATC TCCCTGAAGA TTACCCCGTG GTAAAAAACA TGCTTCACAG ACTGACAGCT 
GACCTGACGC TCGACCCTCG CACTGCACAT CGTGATCTGC TCATCTCCTC TGACTACCGC 
GGCGTGAGTC TGGCTCCACC CGGAACGCCT GTGCCGCTGG ACAGCCCCGA GCGCTTCGAT 
CGGCTCCGGG CTGTGTTGGG TGCGCAGGGC TTCGCGTCAG GTCGCCACTG CTGGGAGGTG 
GAGACCGCGG AAGGCGCGTG CTTCAGAGAC TCTCTGGCGA AGGATGAGGA CGCAGGAGAG 
AGCTGCTACG CTGTGGGCGC TGCGGGGGAG TCCGTGACGC GCAAGGGCCT CATCAAGCTG 
TGCCCATCCG AGGCTATATG GGCCGTGGAG GGCCGCGGCG GCCGCTTGTG GGCGCTCACG 
GCTCCAGAGC CCACTCTACT AGGTGGCGCC AGGCCCCCGC CGCAGCGCAT TCGCGTGGAC 
TTGGACTGGG AGCGGGGTCG TGTGGCCTTC TATGATGGCC GCTCATTGGA CTTGCTCTTC 
GCCTTCCAGG CGCCGGGCCC GCTCGGGGAG CGTGTCTTCC CACTGCTCTG CACTTGTGAC 
CCCCGCGCCC CACTGCGTAT TGTGCCAGGA GAAGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_599201.1
CDS	171..1229
Translation	MEVPELGPGLVERLEQLATCPLCGGPFEDPVLLACEHSFCRSCLARCWGSPAAPGSEEATPSCPCCGQPCPRRSLRSNVRLAVEVRISRGLREKLAEPGARTGRRRGGRIPTMGCLDPQGEDMRKTWRRFDVPVPKSSNSEEDLPEDYPVVKNMLHRLTADLTLDPRTAHRDLLISSDYRGVSLAPPGTPVPLDSPERFDRLRAVLGAQGFASGRHCWEVETAEGACFRDSLAKDEDAGESCYAVGAAGESVTRKGLIKLCPSEAIWAVEGRGGRLWALTAPEPTLLGGARPPPQRIRVDLDWERGRVAFYDGRSLDLLFAFQAPGPLGERVFPLLCTCDPRAPLRIVPGEA

Target ORF information:

RefSeq Version	NM_134374.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus ring finger protein 39 (Rnf39), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_134374.2

ORF Insert Sequence:

ATGGAGGTTC CCGAGCTGGG CCCGGGGTTG GTGGAGCGTC TGGAGCAGCT GGCGACGTGT 
CCGCTGTGCG GGGGCCCCTT CGAGGACCCA GTCCTGCTGG CGTGCGAGCA CAGCTTCTGC 
CGTTCGTGCT TGGCGCGCTG CTGGGGGTCC CCGGCGGCGC CCGGCTCGGA GGAGGCGACC 
CCGTCCTGCC CCTGCTGTGG TCAGCCGTGC CCCAGACGCA GCCTGAGGTC TAACGTGCGA 
CTTGCAGTGG AGGTGCGCAT CAGCCGCGGG CTGCGTGAGA AACTGGCCGA GCCCGGGGCC 
CGGACCGGGA GACGACGCGG CGGCCGCATC CCCACCATGG GCTGCCTGGA TCCCCAAGGA 
GAGGATATGA GAAAGACATG GAGACGATTC GATGTCCCGG TACCCAAGTC ATCTAACTCA 
GAGGAGGATC TCCCTGAAGA TTACCCCGTG GTAAAAAACA TGCTTCACAG ACTGACAGCT 
GACCTGACGC TCGACCCTCG CACTGCACAT CGTGATCTGC TCATCTCCTC TGACTACCGC 
GGCGTGAGTC TGGCTCCACC CGGAACGCCT GTGCCGCTGG ACAGCCCCGA GCGCTTCGAT 
CGGCTCCGGG CTGTGTTGGG TGCGCAGGGC TTCGCGTCAG GTCGCCACTG CTGGGAGGTG 
GAGACCGCGG AAGGCGCGTG CTTCAGAGAC TCTCTGGCGA AGGATGAGGA CGCAGGAGAG 
AGCTGCTACG CTGTGGGCGC TGCGGGGGAG TCCGTGACGC GCAAGGGCCT CATCAAGCTG 
TGCCCATCCG AGGCTATATG GGCCGTGGAG GGCCGCGGCG GCCGCTTGTG GGCGCTCACG 
GCTCCAGAGC CCACTCTACT AGGTGGCGCC AGGCCCCCGC CGCAGCGCAT TCGCGTGGAC 
TTGGACTGGG AGCGGGGTCG TGTGGCCTTC TATGATGGCC GCTCATTGGA CTTGCTCTTC 
GCCTTCCAGG CGCCGGGCCC GCTCGGGGAG CGTGTCTTCC CACTGCTCTG CACTTGTGAC 
CCCCGCGCCC CACTGCGTAT TGTGCCAGGA GAAGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The genomic sequence and comparative analysis of the rat major histocompatibility complex.
Genome research14(4)631-9(2004 Apr)
Hurt P,Walter L,Sudbrak R,Klages S,M?ller I,Shiina T,Inoko H,Lehrach H,G?nther E,Reinhardt R,Himmelbauer H

LIRF, a gene induced during hippocampal long-term potentiation as an immediate-early gene, encodes a novel RING finger protein.
Biochemical and biophysical research communications289(2)479-84(2001 Nov)
Matsuo R,Asada A,Fujitani K,Inokuchi K

Identification and cataloging of genes induced by long-lasting long-term potentiation in awake rats.
Journal of neurochemistry74(6)2239-49(2000 Jun)
Matsuo R,Murayama A,Saitoh Y,Sakaki Y,Inokuchi K