Ybx3 cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Ybx3
Entrez Gene ID	56449
Full Name	Y box protein 3
Synonyms	Csda,Dpba,MSY3,MSY4,Yb2,dbpA,oxyR
General protein information	Preferred Names Y box protein 3 Names Y-box-binding protein 3 DNA-binding protein A cold shock domain protein A cold shock domain-containing protein A
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 6 Map Location: 6\|6 F3

mRNA and Protein(s)

mRNA	Protein	Name
NM_011733.2	NP_035863.1	Y-box-binding protein 3 short isoform
NM_139117.2	NP_620817.2	Y-box-binding protein 3 long isoform

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	CSDA	NP_001003127.1
Pan troglodytes (chimpanzee)	CSDA	XP_520744.3
Mus musculus (house mouse)	Ybx3	NP_620817.2
Gallus gallus (chicken)	CSDA	NP_990737.1
Homo sapiens (human)	YBX3	NP_003642.3
Rattus norvegicus (Norway rat)	Ybx3	NP_114185.3
Xenopus tropicalis (tropical clawed frog)	ybx3	NP_001015855.1
	LOC722347	XP_001118505.1
Bos taurus (cattle)	CSDA	NP_001091543.1

Gene Ontology
Bibliography

Related articles in PubMed

Compound Heterozygosity for Y Box Proteins Causes Sterility Due to Loss of Translational Repression.
Snyder E, Soundararajan R, Sharma M, Dearth A, Smith B, Braun RE
PLoS genetics11(12)e1005690(2015 Dec)

CFTR interacts with ZO-1 to regulate tight junction assembly and epithelial differentiation through the ZONAB pathway.
Ruan YC, Wang Y, Da Silva N, Kim B, Diao RY, Hill E, Brown D, Chan HC, Breton S
Journal of cell science127(Pt 20)4396-408(2014 Oct)

The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo.
Shimizu H, Kubo A, Uchibe K, Hashimoto M, Yokoyama S, Takada S, Mitsuoka K, Asahara H
PloS one8(10)e75754(2013)

Identification of novel transcription-regulating genes expressed during murine molar development.
Uchibe K, Shimizu H, Yokoyama S, Kuboki T, Asahara H
Developmental dynamics : an official publication of the American Association of Anatomists241(7)1217-26(2012 Jul)

Kruppel-like factor 1 (KLF1), KLF2, and Myc control a regulatory network essential for embryonic erythropoiesis.
Pang CJ, Lemsaddek W, Alhashem YN, Bondzi C, Redmond LC, Ah-Son N, Dumur CI, Archer KJ, Haar JL, Lloyd JA, Trudel M
Molecular and cellular biology32(13)2628-44(2012 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

homozygous double mutants could not be generated as haploinsufficiency of both Ybx2 and Ybx3 caused sterility characterized by extensive defects in spermatid differentiation.
Title: Compound Heterozygosity for Y Box Proteins Causes Sterility Due to Loss of Translational Repression.

In a hindlimb ischemia model, transfer of short-hairpin RNA targeting CSDA ameliorated ischemia without direct transfer of angiogenic factors.
Title: Critical roles of cold shock domain protein A as an endogenous angiogenesis inhibitor in skeletal muscle.

ZO-1 and ZONAB are critical for differentiation and homeostasis of the RPE monolayer and may be involved in RPE disorders such as proliferative vitroretinopathy and atrophic age-related macular degeneration
Title: The tight junction associated signalling proteins ZO-1 and ZONAB regulate retinal pigment epithelium homeostasis in mice.

results indicated CD133(+) subpopulation of SW480 SCPs bear heterogeneous invasive and metastatic ability, and CRC-CSCs might be a heterogeous subpopulation
Title: Cold shock domain protein A (CSDA) overexpression inhibits tumor growth and lymph node metastasis in a mouse model of squamous cell carcinoma.

MSY4 is an important component of the mechanisms that sense epithelial density and participates in the complex transcriptional networks that regulate the switch between proliferation and differentiation
Title: ZONAB promotes proliferation and represses differentiation of proximal tubule epithelial cells.

The following Ybx3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ybx3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OMu08714	NM_011733.2 Latest version!	Mus musculus Y box protein 3 (Ybx3), transcript variant 2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$216.30 $309.00
OMu10932	NM_139117.2 Latest version!	Mus musculus Y box protein 3 (Ybx3), transcript variant 1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$237.30 $339.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Ybx3 ( NM_011733.2 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_035863.1 Mus musculus Y box protein 3 (Ybx3), transcript variant 2, mRNA.

Price & Availability↑

CloneID	OMu08714
Clone ID Related Accession (Same CDS sequence)	NM_011733.2
Accession Version	NM_011733.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 879bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-09-20
Organism	Mus musculus(house mouse)
Product	Y-box-binding protein 3 short isoform
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC027785.1 and BC048242.1. On or before Jun 7, 2008 this sequence version replaced NM_019638.1, NM_011733.1. Transcript Variant: This variant (2) lacks an alternate in-frame segment in the coding region, compared to variant 1. The resulting protein, known as the short isoform, is shorter than the long isoform. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC027785.1, AF248547.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384, SAMN01164134 [ECO:0000348] ##Evidence-Data-END##

ATGAGCGAGG CGGGCGAGGC CACCACCGGC GGCACCACGC TCCCGCAGGC CGCGGCCGAC 
GCGCCCGCCG CGGCGCCCCC GGACCCCGCG CCTAAGAGCC CGGCGGCCAG CGGCGCGCCC 
CAGGCCCCGG CGCCCGCCGC GCTGCTCGCG GGGAGCCCCG GCGGAGACGC AGCCCCCGGG 
CCCGCCCCGG CCTCATCAGC CCCCGCGGGC GGCGAGGACG CGGAGAAGAA AGTTCTCGCC 
ACCAAAGTCC TTGGCACTGT CAAATGGTTC AACGTCAGAA ATGGATATGG ATTTATAAAC 
CGAAATGACA CCAAAGAAGA TGTGTTTGTA CACCAGACGG CCATCAAGAA AAACAACCCA 
CGCAAGTATC TGCGCAGTGT GGGGGATGGA GAAACTGTAG AGTTTGATGT AGTTGAAGGA 
GAAAAGGGTG CTGAAGCAGC AAACGTGACT GGCCCAGATG GAGTTCCTGT AGAAGGGAGT 
CGCTATGCTG CTGACCGGCG CCGGTACAGA CGCGGCTACT ATGGCAGGCG CCGTGGACCT 
CCCCGTAATG CTGGTGAGAT TGGGGAGATG AAGGATGGAG TCCCCGAGGG AACACAGCTC 
CAGGCTCATC GGAATCCGAC TTACCGCCCG AGGTTCCGCA GGGGACCTGC TCGCCCACGA 
CCTGCCCCTG CTATTGGAGA GGCTGAAGAC AAAGAAAACC AGCAAGCGGC TAATGGTCCA 
AACCAGCCGT CTGCCCGCCG TGGATTCCGA CGTCCCTACA ACTATAGGCG CCGTTCCCGT 
CCCCTCAACG CTGTTTCACA AGATGGCAAA GAGACCAAGG CAGGTGAAGC ACCAACTGAG 
AACCCCGCTC CAGCTACCGA ACAGAGCAGT GCCGAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_035863.1
CDS	196..1074
Translation	MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGTQLQAHRNPTYRPRFRRGPARPRPAPAIGEAEDKENQQAANGPNQPSARRGFRRPYNYRRRSRPLNAVSQDGKETKAGEAPTENPAPATEQSSAE

Target ORF information:

RefSeq Version	NM_011733.2
Organism	Mus musculus(house mouse)
Definition	Mus musculus Y box protein 3 (Ybx3), transcript variant 2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_011733.2

ORF Insert Sequence:

ATGAGCGAGG CGGGCGAGGC CACCACCGGC GGCACCACGC TCCCGCAGGC CGCGGCCGAC 
GCGCCCGCCG CGGCGCCCCC GGACCCCGCG CCTAAGAGCC CGGCGGCCAG CGGCGCGCCC 
CAGGCCCCGG CGCCCGCCGC GCTGCTCGCG GGGAGCCCCG GCGGAGACGC AGCCCCCGGG 
CCCGCCCCGG CCTCATCAGC CCCCGCGGGC GGCGAGGACG CGGAGAAGAA AGTTCTCGCC 
ACCAAAGTCC TTGGCACTGT CAAATGGTTC AACGTCAGAA ATGGATATGG ATTTATAAAC 
CGAAATGACA CCAAAGAAGA TGTGTTTGTA CACCAGACGG CCATCAAGAA AAACAACCCA 
CGCAAGTATC TGCGCAGTGT GGGGGATGGA GAAACTGTAG AGTTTGATGT AGTTGAAGGA 
GAAAAGGGTG CTGAAGCAGC AAACGTGACT GGCCCAGATG GAGTTCCTGT AGAAGGGAGT 
CGCTATGCTG CTGACCGGCG CCGGTACAGA CGCGGCTACT ATGGCAGGCG CCGTGGACCT 
CCCCGTAATG CTGGTGAGAT TGGGGAGATG AAGGATGGAG TCCCCGAGGG AACACAGCTC 
CAGGCTCATC GGAATCCGAC TTACCGCCCG AGGTTCCGCA GGGGACCTGC TCGCCCACGA 
CCTGCCCCTG CTATTGGAGA GGCTGAAGAC AAAGAAAACC AGCAAGCGGC TAATGGTCCA 
AACCAGCCGT CTGCCCGCCG TGGATTCCGA CGTCCCTACA ACTATAGGCG CCGTTCCCGT 
CCCCTCAACG CTGTTTCACA AGATGGCAAA GAGACCAAGG CAGGTGAAGC ACCAACTGAG 
AACCCCGCTC CAGCTACCGA ACAGAGCAGT GCCGAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Ybx3 ( NM_139117.2 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_620817.2 Mus musculus Y box protein 3 (Ybx3), transcript variant 1, mRNA.

Price & Availability↑

CloneID	OMu10932
Clone ID Related Accession (Same CDS sequence)	NM_139117.2
Accession Version	NM_139117.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1086bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-09-20
Organism	Mus musculus(house mouse)
Product	Y-box-binding protein 3 long isoform
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC027785.1 and BC048242.1. On May 6, 2004 this sequence version replaced NM_139117.1. Transcript Variant: This variant (1) represents the longer transcript and it encodes the long isoform. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC048242.1, AF246224.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384, SAMN01164134 [ECO:0000348] ##Evidence-Data-END##

ATGAGCGAGG CGGGCGAGGC CACCACCGGC GGCACCACGC TCCCGCAGGC CGCGGCCGAC 
GCGCCCGCCG CGGCGCCCCC GGACCCCGCG CCTAAGAGCC CGGCGGCCAG CGGCGCGCCC 
CAGGCCCCGG CGCCCGCCGC GCTGCTCGCG GGGAGCCCCG GCGGAGACGC AGCCCCCGGG 
CCCGCCCCGG CCTCATCAGC CCCCGCGGGC GGCGAGGACG CGGAGAAGAA AGTTCTCGCC 
ACCAAAGTCC TTGGCACTGT CAAATGGTTC AACGTCAGAA ATGGATATGG ATTTATAAAC 
CGAAATGACA CCAAAGAAGA TGTGTTTGTA CACCAGACGG CCATCAAGAA AAACAACCCA 
CGCAAGTATC TGCGCAGTGT GGGGGATGGA GAAACTGTAG AGTTTGATGT AGTTGAAGGA 
GAAAAGGGTG CTGAAGCAGC AAACGTGACT GGCCCAGATG GAGTTCCTGT AGAAGGGAGT 
CGCTATGCTG CTGACCGGCG CCGGTACAGA CGCGGCTACT ATGGCAGGCG CCGTGGACCT 
CCCCGTAATT ACGCTGGGGA GGAGGAGGAG GAAGGGAGCG GCAGCAGTGA AGGATTTGAG 
CCCCCTGCCG CAGATGGGCA GTTCTCTGGG GCCAGGAATC AGCTGCGCCG CCCCCAGTAT 
CGCCCTCCAT ACCGGCAGCG GCGTTTCCCG CCTTACCACG TGGGACAGAC CTTTGACCGT 
CGCTCACGGG TCTTTCCCCA TCCCAACAGA ATGCAGGCTG GTGAGATTGG GGAGATGAAG 
GATGGAGTCC CCGAGGGAAC ACAGCTCCAG GCTCATCGGA ATCCGACTTA CCGCCCGAGG 
TTCCGCAGGG GACCTGCTCG CCCACGACCT GCCCCTGCTA TTGGAGAGGC TGAAGACAAA 
GAAAACCAGC AAGCGGCTAA TGGTCCAAAC CAGCCGTCTG CCCGCCGTGG ATTCCGACGT 
CCCTACAACT ATAGGCGCCG TTCCCGTCCC CTCAACGCTG TTTCACAAGA TGGCAAAGAG 
ACCAAGGCAG GTGAAGCACC AACTGAGAAC CCCGCTCCAG CTACCGAACA GAGCAGTGCC 
GAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_620817.2
CDS	196..1281
Translation	MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFEPPAADGQFSGARNQLRRPQYRPPYRQRRFPPYHVGQTFDRRSRVFPHPNRMQAGEIGEMKDGVPEGTQLQAHRNPTYRPRFRRGPARPRPAPAIGEAEDKENQQAANGPNQPSARRGFRRPYNYRRRSRPLNAVSQDGKETKAGEAPTENPAPATEQSSAE

Target ORF information:

RefSeq Version	NM_139117.2
Organism	Mus musculus(house mouse)
Definition	Mus musculus Y box protein 3 (Ybx3), transcript variant 1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_139117.2

ORF Insert Sequence:

ATGAGCGAGG CGGGCGAGGC CACCACCGGC GGCACCACGC TCCCGCAGGC CGCGGCCGAC 
GCGCCCGCCG CGGCGCCCCC GGACCCCGCG CCTAAGAGCC CGGCGGCCAG CGGCGCGCCC 
CAGGCCCCGG CGCCCGCCGC GCTGCTCGCG GGGAGCCCCG GCGGAGACGC AGCCCCCGGG 
CCCGCCCCGG CCTCATCAGC CCCCGCGGGC GGCGAGGACG CGGAGAAGAA AGTTCTCGCC 
ACCAAAGTCC TTGGCACTGT CAAATGGTTC AACGTCAGAA ATGGATATGG ATTTATAAAC 
CGAAATGACA CCAAAGAAGA TGTGTTTGTA CACCAGACGG CCATCAAGAA AAACAACCCA 
CGCAAGTATC TGCGCAGTGT GGGGGATGGA GAAACTGTAG AGTTTGATGT AGTTGAAGGA 
GAAAAGGGTG CTGAAGCAGC AAACGTGACT GGCCCAGATG GAGTTCCTGT AGAAGGGAGT 
CGCTATGCTG CTGACCGGCG CCGGTACAGA CGCGGCTACT ATGGCAGGCG CCGTGGACCT 
CCCCGTAATT ACGCTGGGGA GGAGGAGGAG GAAGGGAGCG GCAGCAGTGA AGGATTTGAG 
CCCCCTGCCG CAGATGGGCA GTTCTCTGGG GCCAGGAATC AGCTGCGCCG CCCCCAGTAT 
CGCCCTCCAT ACCGGCAGCG GCGTTTCCCG CCTTACCACG TGGGACAGAC CTTTGACCGT 
CGCTCACGGG TCTTTCCCCA TCCCAACAGA ATGCAGGCTG GTGAGATTGG GGAGATGAAG 
GATGGAGTCC CCGAGGGAAC ACAGCTCCAG GCTCATCGGA ATCCGACTTA CCGCCCGAGG 
TTCCGCAGGG GACCTGCTCG CCCACGACCT GCCCCTGCTA TTGGAGAGGC TGAAGACAAA 
GAAAACCAGC AAGCGGCTAA TGGTCCAAAC CAGCCGTCTG CCCGCCGTGG ATTCCGACGT 
CCCTACAACT ATAGGCGCCG TTCCCGTCCC CTCAACGCTG TTTCACAAGA TGGCAAAGAG 
ACCAAGGCAG GTGAAGCACC AACTGAGAAC CCCGCTCCAG CTACCGAACA GAGCAGTGCC 
GAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Compound Heterozygosity for Y Box Proteins Causes Sterility Due to Loss of Translational Repression.
PLoS genetics11(12)e1005690(2015 Dec)
Snyder E,Soundararajan R,Sharma M,Dearth A,Smith B,Braun RE

CFTR interacts with ZO-1 to regulate tight junction assembly and epithelial differentiation through the ZONAB pathway.
Journal of cell science127(Pt 20)4396-408(2014 Oct)
Ruan YC,Wang Y,Da Silva N,Kim B,Diao RY,Hill E,Brown D,Chan HC,Breton S

The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo.
PloS one8(10)e75754(2013)
Shimizu H,Kubo A,Uchibe K,Hashimoto M,Yokoyama S,Takada S,Mitsuoka K,Asahara H

Identification of novel transcription-regulating genes expressed during murine molar development.
Developmental dynamics : an official publication of the American Association of Anatomists241(7)1217-26(2012 Jul)
Uchibe K,Shimizu H,Yokoyama S,Kuboki T,Asahara H

Kruppel-like factor 1 (KLF1), KLF2, and Myc control a regulatory network essential for embryonic erythropoiesis.
Molecular and cellular biology32(13)2628-44(2012 Jul)
Pang CJ,Lemsaddek W,Alhashem YN,Bondzi C,Redmond LC,Ah-Son N,Dumur CI,Archer KJ,Haar JL,Lloyd JA,Trudel M

見積依頼

Eメール

japanmarket@genscript.com

電話

03-6811-6572

FAX

03-6811-6573
050-3174-7589(受注専用)

オンラインフォーム

オンライン注文

Ybx3 cDNA ORF clone, Mus musculus(house mouse)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

見積依頼

Eメール

電話

FAX

オンラインフォーム

サポート

会社情報

サポート

会社情報