Col9a3 cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Col9a3
Entrez Gene ID	12841
Full Name	collagen, type IX, alpha 3
Synonyms	AV006866
General protein information	Preferred Names collagen, type IX, alpha 3 Names collagen alpha-3(IX) chain procollagen, type IX, alpha 3
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 2 Map Location: 2 H4\|2 103.14 cM

mRNA and Protein(s)

mRNA	Protein	Name
XM_030247058.1	XP_030102918.1	collagen alpha-3(IX) chain isoform X1
NM_009936.2	NP_034066.2	collagen alpha-3(IX) chain precursor
XM_006500553.3	XP_006500616.1	collagen alpha-3(IX) chain isoform X2

Pathways from BioSystems

Homologies

Gallus gallus (chicken)	COL9A3	NP_990636.1
Bos taurus (cattle)	COL9A3	XP_002692454.2
Mus musculus (house mouse)	Col9a3	NP_034066.2
Rattus norvegicus (Norway rat)	Col9a3	XP_003749688.1
Homo sapiens (human)	COL9A3	NP_001844.3
Canis lupus familiaris (dog)	COL9A3	NP_001184100.1
Danio rerio (zebrafish)	col9a3	XP_695491.2
Xenopus tropicalis (tropical clawed frog)	col9a3	NP_001120497.1
Pan troglodytes (chimpanzee)	COL9A3	XP_001150788.1

Gene Ontology
Bibliography

Related articles in PubMed

Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development.
Rutledge EA, Benazet JD, McMahon AP
Development (Cambridge, England)144(17)3177-3188(2017 09)

Early changes in morphology, bone mineral density and matrix composition of vertebrae lead to disc degeneration in aged collagen IX -/- mice.
Kamper M, Hamann N, Prein C, Clausen-Schaumann H, Farkas Z, Aszodi A, Niehoff A, Paulsson M, Zaucke F
Matrix biology : journal of the International Society for Matrix Biology49132-143(2016 Jan)

A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.
Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K, Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A, Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S, Wohnoutka P, Hawrylycz MJ, Puelles L, Jones AR
Neuron83(2)309-323(2014 Jul)

Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates.
Miller JA, Nathanson J, Franjic D, Shim S, Dalley RA, Shapouri S, Smith KA, Sunkin SM, Bernard A, Bennett JL, Lee CK, Hawrylycz MJ, Jones AR, Amaral DG, ?estan N, Gage FH, Lein ES
Development (Cambridge, England)140(22)4633-44(2013 Nov)

Comparative proteomic analysis of normal and collagen IX null mouse cartilage reveals altered extracellular matrix composition and novel components of the collagen IX interactome.
Brachvogel B, Zaucke F, Dave K, Norris EL, Stermann J, Dayakli M, Koch M, Gorman JJ, Bateman JF, Wilson R
The Journal of biological chemistry288(19)13481-92(2013 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Results show that absence of Col IX induces early developmental, structural and biomechanical alterations in both vertebral body and intervertebral disc which eventually cause severe degenerative changes in the aging spine.
Title: Early changes in morphology, bone mineral density and matrix composition of vertebrae lead to disc degeneration in aged collagen IX -/- mice.

The following Col9a3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Col9a3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OMu31121	XM_006500553.3 Latest version!	Mus musculus collagen, type IX, alpha 3 (Col9a3), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$307.30 $439.00
OMu87680	XM_030247058.1 Latest version!	Mus musculus collagen, type IX, alpha 3 (Col9a3), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$391.30 $559.00
OMu20656	NM_009936.2 Latest version!	Mus musculus collagen, type IX, alpha 3 (Col9a3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$391.30 $559.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Col9a3 ( XM_006500553.3 ) cDNA ORF clone, Mus musculus(house mouse) -> XP_006500616.1 Mus musculus collagen, type IX, alpha 3 (Col9a3), transcript variant X2, mRNA.

Price & Availability↑

CloneID	OMu31121
Clone ID Related Accession (Same CDS sequence)	XM_006500553.3
Accession Version	XM_006500553.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1935bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-07
Organism	Mus musculus(house mouse)
Product	collagen alpha-3(IX) chain isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006500553.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACCGGAG CGCCTGCCCT AGCCCTGCTG CTGCTGGGGC AGCTCCTGAC GGCCACCTCC 
GCGCAGAAAG TGGGACCCCG AGGCCCCCCT GGTCCCCAAG GGCCTCCTGG AAAACCCGGC 
AAGGATGGCA TTGATGGAGA AGCTGGCCCT CCAGGTCTGC CTGGCCTTCC AGGACCCAAA 
GGGACCTCAG GGAAGCCAGG GAAGCCGGGA GAGGCAGGAC TGCCAGGACT GCCTGGTGTA 
GATGGTCTGA CAGGGAGAGA TGGACCCGCA GGACCCAAAG GTGCCCCTGG AGAACGGGGA 
AGTCTAGGAC CCCCAGGGCC ACCAGGACTT GGGGGCAAAG GCCTCCCTGG ACCTCCTGGA 
AACCCTGGAG TCCTCCCTGA AGGTGCTACT GATCTGCAGT GTCCCGCCAT CTGCCCGCCA 
GGCCCTCCGG GACCCCCAGG AATGCCGGGG TTCAAGGGGC CTACTGGCTA CAAAGGGGAA 
CAAGGAGAAG TTGGCAAAGA TGGTGAGAAG GGTAGTCCTG GCCCCCCCGG GCCTCCTGGA 
ATCCCAGGCA CCGTGGGGCT ACAGGGCCCA CGAGGATTAA GAGGACTTCC AGGGCCACTC 
GGGCCCCCTG GGGACCGGGG TCCCATTGGG TTTCGGGGCC CCCCTGGGAC CCCAGGAGCA 
CCTGGGAAAG TGGGTGACAG GGGTGAAAGG GGACCAGAAG GGTTCCGTGG CCCTAAGGGT 
GACCTGGGCA GGCCTGGTCC CAAAGGAATC CCTGGAATGG CTGGGCCAGG CGGAGAACCA 
GGCATGCCAG GCAAGGATGG CAAAGATGGT GTGCCGGGAC TTGATGGTGA GAAGGGAGAG 
GCTGGTCGCA ATGGTGGCCA AGGAGAGAAA GGCCCCAATG GGCTGCCGGG GCTCCCTGGA 
CGAGCAGGGT CCAAAGGCGA GAAGGGAGAA CCGGGTAGAA CTGGCGAGCT GGGTGAGGCT 
GGCCCCTCTG GAGAGCCAGG TATCCCTGGA GATGTTGGTG TTCCAGGGGA GCGTGGTGAG 
GCTGGTCACA GGGGCTCCGT GGGAGCTCTT GGCCCACAAG GTCCTCCTGG TGCTCCTGGC 
ATCCGTGGCT TTCAGGGACA AAAAGGCAGC ACAGGAGACC CTGGCCTTCC GGGCCCCCAA 
GGCCTACGGG GAGATGTGGG TGACCGGGGT CCAGGAGGTG CCACAGGCCC TAAGGGAGAC 
CAGGGCATTG CAGGTTCCGA TGGTCTTCCA GGGGACAAAG GCGAGCTGGG TCCTAATGGC 
CCCGTTGGAC AAAAAGGAGA GTCTGGCAGC CGAGGGGAAC TGGGCCCCAA AGGCATCCAG 
GGCCCCAATG GCACCAGTGG AGTCCAGGGT GTACCTGGTC CCCCAGGTCC ACTGGGCCTC 
CAAGGTGTGC AGGGTGTCCC AGGCATCACC GGGAAGCCTG GAGTTCCGGG CAAGGAAGCC 
AGTGAACAGC GCATCAGGGA GCTATGCGGG GGTATGATCA GTGAGCAAAT TGCACAGTTG 
GCTGCACACC TGAGGAAGCC CTTAGCACCA GGCTCCATCG GCAGGCCTGG TCCAGCTGGC 
CCCCCAGGCC CTCCAGGCCC TCCAGGCTCT ATTGGCCACC CTGGCGCTCG GGGTCCCCCT 
GGATACCGTG GTCCCACTGG GGAACTAGGA GATCCTGGAC CAAGAGGGAG CCAGGGTGAC 
AGAGGGGACA AGGGAGCAAC AGGTGCAGGG CTGGATGGGC CTGCTGGGGA CCAGGGCTAC 
CAAGGGCCTC AAGGTGTACC TGGCATCAGC AAAGATGGTC GAGATGGTGC TCATGGTGAG 
CCTGGCCTTC CCGGTGATCC TGGCCTTCCT GGAGCTGCTG GTGCTCAGGG TACCCCAGGG 
ATCTGCGACA CTTCAGCCTG CCAAGGAGCT GTGTTAGGGG GAGGTGGGGA AAAGTCGGGT 
CCTCGGAGCT CATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006500616.1
CDS	159..2093
Translation	MTGAPALALLLLGQLLTATSAQKVGPRGPPGPQGPPGKPGKDGIDGEAGPPGLPGLPGPKGTSGKPGKPGEAGLPGLPGVDGLTGRDGPAGPKGAPGERGSLGPPGPPGLGGKGLPGPPGNPGVLPEGATDLQCPAICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGSPGPPGPPGIPGTVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGTPGAPGKVGDRGERGPEGFRGPKGDLGRPGPKGIPGMAGPGGEPGMPGKDGKDGVPGLDGEKGEAGRNGGQGEKGPNGLPGLPGRAGSKGEKGEPGRTGELGEAGPSGEPGIPGDVGVPGERGEAGHRGSVGALGPQGPPGAPGIRGFQGQKGSTGDPGLPGPQGLRGDVGDRGPGGATGPKGDQGIAGSDGLPGDKGELGPNGPVGQKGESGSRGELGPKGIQGPNGTSGVQGVPGPPGPLGLQGVQGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGSQGDRGDKGATGAGLDGPAGDQGYQGPQGVPGISKDGRDGAHGEPGLPGDPGLPGAAGAQGTPGICDTSACQGAVLGGGGEKSGPRSS

Target ORF information:

RefSeq Version	XM_006500553.3
Organism	Mus musculus(house mouse)
Definition	Mus musculus collagen, type IX, alpha 3 (Col9a3), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006500553.3

ORF Insert Sequence:

ATGACCGGAG CGCCTGCCCT AGCCCTGCTG CTGCTGGGGC AGCTCCTGAC GGCCACCTCC 
GCGCAGAAAG TGGGACCCCG AGGCCCCCCT GGTCCCCAAG GGCCTCCTGG AAAACCCGGC 
AAGGATGGCA TTGATGGAGA AGCTGGCCCT CCAGGTCTGC CTGGCCTTCC AGGACCCAAA 
GGGACCTCAG GGAAGCCAGG GAAGCCGGGA GAGGCAGGAC TGCCAGGACT GCCTGGTGTA 
GATGGTCTGA CAGGGAGAGA TGGACCCGCA GGACCCAAAG GTGCCCCTGG AGAACGGGGA 
AGTCTAGGAC CCCCAGGGCC ACCAGGACTT GGGGGCAAAG GCCTCCCTGG ACCTCCTGGA 
AACCCTGGAG TCCTCCCTGA AGGTGCTACT GATCTGCAGT GTCCCGCCAT CTGCCCGCCA 
GGCCCTCCGG GACCCCCAGG AATGCCGGGG TTCAAGGGGC CTACTGGCTA CAAAGGGGAA 
CAAGGAGAAG TTGGCAAAGA TGGTGAGAAG GGTAGTCCTG GCCCCCCCGG GCCTCCTGGA 
ATCCCAGGCA CCGTGGGGCT ACAGGGCCCA CGAGGATTAA GAGGACTTCC AGGGCCACTC 
GGGCCCCCTG GGGACCGGGG TCCCATTGGG TTTCGGGGCC CCCCTGGGAC CCCAGGAGCA 
CCTGGGAAAG TGGGTGACAG GGGTGAAAGG GGACCAGAAG GGTTCCGTGG CCCTAAGGGT 
GACCTGGGCA GGCCTGGTCC CAAAGGAATC CCTGGAATGG CTGGGCCAGG CGGAGAACCA 
GGCATGCCAG GCAAGGATGG CAAAGATGGT GTGCCGGGAC TTGATGGTGA GAAGGGAGAG 
GCTGGTCGCA ATGGTGGCCA AGGAGAGAAA GGCCCCAATG GGCTGCCGGG GCTCCCTGGA 
CGAGCAGGGT CCAAAGGCGA GAAGGGAGAA CCGGGTAGAA CTGGCGAGCT GGGTGAGGCT 
GGCCCCTCTG GAGAGCCAGG TATCCCTGGA GATGTTGGTG TTCCAGGGGA GCGTGGTGAG 
GCTGGTCACA GGGGCTCCGT GGGAGCTCTT GGCCCACAAG GTCCTCCTGG TGCTCCTGGC 
ATCCGTGGCT TTCAGGGACA AAAAGGCAGC ACAGGAGACC CTGGCCTTCC GGGCCCCCAA 
GGCCTACGGG GAGATGTGGG TGACCGGGGT CCAGGAGGTG CCACAGGCCC TAAGGGAGAC 
CAGGGCATTG CAGGTTCCGA TGGTCTTCCA GGGGACAAAG GCGAGCTGGG TCCTAATGGC 
CCCGTTGGAC AAAAAGGAGA GTCTGGCAGC CGAGGGGAAC TGGGCCCCAA AGGCATCCAG 
GGCCCCAATG GCACCAGTGG AGTCCAGGGT GTACCTGGTC CCCCAGGTCC ACTGGGCCTC 
CAAGGTGTGC AGGGTGTCCC AGGCATCACC GGGAAGCCTG GAGTTCCGGG CAAGGAAGCC 
AGTGAACAGC GCATCAGGGA GCTATGCGGG GGTATGATCA GTGAGCAAAT TGCACAGTTG 
GCTGCACACC TGAGGAAGCC CTTAGCACCA GGCTCCATCG GCAGGCCTGG TCCAGCTGGC 
CCCCCAGGCC CTCCAGGCCC TCCAGGCTCT ATTGGCCACC CTGGCGCTCG GGGTCCCCCT 
GGATACCGTG GTCCCACTGG GGAACTAGGA GATCCTGGAC CAAGAGGGAG CCAGGGTGAC 
AGAGGGGACA AGGGAGCAAC AGGTGCAGGG CTGGATGGGC CTGCTGGGGA CCAGGGCTAC 
CAAGGGCCTC AAGGTGTACC TGGCATCAGC AAAGATGGTC GAGATGGTGC TCATGGTGAG 
CCTGGCCTTC CCGGTGATCC TGGCCTTCCT GGAGCTGCTG GTGCTCAGGG TACCCCAGGG 
ATCTGCGACA CTTCAGCCTG CCAAGGAGCT GTGTTAGGGG GAGGTGGGGA AAAGTCGGGT 
CCTCGGAGCT CATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Col9a3 ( XM_030247058.1 ) cDNA ORF clone, Mus musculus(house mouse) -> XP_030102918.1 Mus musculus collagen, type IX, alpha 3 (Col9a3), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OMu87680
Clone ID Related Accession (Same CDS sequence)	XM_030247058.1
Accession Version	XM_030247058.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2160bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-07
Organism	Mus musculus(house mouse)
Product	collagen alpha-3(IX) chain isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACCGGAG CGCCTGCCCT AGCCCTGCTG CTGCTGGGGC AGCTCCTGAC GGCCACCTCC 
GCGCAGAAAG TGGGACCCCG AGGCCCCCCT GGTCCCCAAG GGCCTCCTGG AAAACCCGGC 
AAGGATGGCA TTGATGGAGA AGCTGGCCCT CCAGGTCTGC CTGGCCTTCC AGGACCCAAA 
GGGACCTCAG GGAAGCCAGG GAAGCCGGGA GAGGCAGGAC TGCCAGGACT GCCTGGTGTA 
GATGGTCTGA CAGGGAGAGA TGGACCCGCA GGACCCAAAG GTGCCCCTGG AGAACGGGGA 
AGTCTAGGAC CCCCAGGGCC ACCAGGACTT GGGGGCAAAG GCCTCCCTGG ACCTCCTGGA 
GAGGCAGGAG TGAGTGGCCT CCCAGGTGGG ATTGGTCTAC GTGGCCCCCC GGGACCCTCT 
GGACTTCCAG GACTGCCTGG CCTCCCAGGA CCTCCTGGAC CTCCTGGAAA CCCTGGAGTC 
CTCCCTGAAG GTGCTACTGA TCTGCAGTGT CCCGCCATCT GCCCGCCAGG CCCTCCGGGA 
CCCCCAGGAA TGCCGGGGTT CAAGGGGCCT ACTGGCTACA AAGGGGAACA AGGAGAAGTT 
GGCAAAGATG GTGAGAAGGG TAGTCCTGGC CCCCCCGGGC CTCCTGGAAT CCCAGGCACC 
GTGGGGCTAC AGGGCCCACG AGGATTAAGA GGACTTCCAG GGCCACTCGG GCCCCCTGGG 
GACCGGGGTC CCATTGGGTT TCGGGGCCCC CCTGGGACCC CAGGAGCACC TGGGAAAGTG 
GGTGACAGGG GTGAAAGGGG ACCAGAAGGG TTCCGTGGCC CTAAGGGTGA CCTGGGCAGG 
CCTGGTCCCA AAGGAATCCC TGGAATGGCT GGGCCAGGCG GAGAACCAGG CATGCCAGGC 
AAGGATGGCA AAGATGGTGT GCCGGGACTT GATGGTGAGA AGGGAGAGGC TGGTCGCAAT 
GGTGGCCAAG GAGAGAAAGG CCCCAATGGG CTGCCGGGGC TCCCTGGACG AGCAGGGTCC 
AAAGGCGAGA AGGGAGAACC GGGTAGAACT GGCGAGCTGG GTGAGGCTGG CCCCTCTGGA 
GAGCCAGGTA TCCCTGGAGA TGTTGGTGTT CCAGGGGAGC GTGGTGAGGC TGGTCACAGG 
GGCTCCGTGG GAGCTCTTGG CCCACAAGGT CCTCCTGGTG CTCCTGGCAT CCGTGGCTTT 
CAGGGACAAA AAGGCAGCAC AGGAGACCCT GGCCTTCCGG GCCCCCAAGG CCTACGGGGA 
GATGTGGGTG ACCGGGTAAG GGTTGTTCTC TTGCACCTCC CTGCTCTAAC CAGTCTACAT 
AGACTCAAGC CAGCAGCAGC CCACTCCTTC CCACGTGGGT GGCAGGGATG GCAGCACCAA 
CTATGTGGAC AGGGTCCAGG AGGTGCCACA GGCCCTAAGG GAGACCAGGG CATTGCAGGT 
TCCGATGGTC TTCCAGGGGA CAAAGGCGAG CTGGGTCCTA ATGGCCCCGT TGGACAAAAA 
GGAGAGTCTG GCAGCCGAGG GGAACTGGGC CCCAAAGGCA TCCAGGGCCC CAATGGCACC 
AGTGGAGTCC AGGGTGTACC TGGTCCCCCA GGTCCACTGG GCCTCCAAGG TGTGCAGGGT 
GTCCCAGGCA TCACCGGGAA GCCTGGAGTT CCGGGCAAGG AAGCCAGTGA ACAGCGCATC 
AGGGAGCTAT GCGGGGGTAT GATCAGTGAG CAAATTGCAC AGTTGGCTGC ACACCTGAGG 
AAGCCCTTAG CACCAGGCTC CATCGGCAGG CCTGGTCCAG CTGGCCCCCC AGGCCCTCCA 
GGCCCTCCAG GCTCTATTGG CCACCCTGGC GCTCGGGGTC CCCCTGGATA CCGTGGTCCC 
ACTGGGGAAC TAGGAGATCC TGGACCAAGA GGGAGCCAGG GTGACAGAGG GGACAAGGGA 
GCAACAGGTG CAGGGCTGGA TGGGCCTGCT GGGGACCAGG GCTACCAAGG GCCTCAAGGT 
GTACCTGGCA TCAGCAAAGA TGGTCGAGAT GGTGCTCATG GTGAGCCTGG CCTTCCCGGT 
GATCCTGGCC TTCCTGGAGC TGCTGGTGCT CAGGGTACCC CAGGGATCTG CGACACTTCA 
GCCTGCCAAG GAGCTGTGTT AGGGGGAGGT GGGGAAAAGT CGGGTCCTCG GAGCTCATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_030102918.1
CDS	159..2318
Translation	MTGAPALALLLLGQLLTATSAQKVGPRGPPGPQGPPGKPGKDGIDGEAGPPGLPGLPGPKGTSGKPGKPGEAGLPGLPGVDGLTGRDGPAGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGLPGGIGLRGPPGPSGLPGLPGLPGPPGPPGNPGVLPEGATDLQCPAICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGSPGPPGPPGIPGTVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGTPGAPGKVGDRGERGPEGFRGPKGDLGRPGPKGIPGMAGPGGEPGMPGKDGKDGVPGLDGEKGEAGRNGGQGEKGPNGLPGLPGRAGSKGEKGEPGRTGELGEAGPSGEPGIPGDVGVPGERGEAGHRGSVGALGPQGPPGAPGIRGFQGQKGSTGDPGLPGPQGLRGDVGDRVRVVLLHLPALTSLHRLKPAAAHSFPRGWQGWQHQLCGQGPGGATGPKGDQGIAGSDGLPGDKGELGPNGPVGQKGESGSRGELGPKGIQGPNGTSGVQGVPGPPGPLGLQGVQGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGSQGDRGDKGATGAGLDGPAGDQGYQGPQGVPGISKDGRDGAHGEPGLPGDPGLPGAAGAQGTPGICDTSACQGAVLGGGGEKSGPRSS

Target ORF information:

RefSeq Version	XM_030247058.1
Organism	Mus musculus(house mouse)
Definition	Mus musculus collagen, type IX, alpha 3 (Col9a3), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_030247058.1

ORF Insert Sequence:

ATGACCGGAG CGCCTGCCCT AGCCCTGCTG CTGCTGGGGC AGCTCCTGAC GGCCACCTCC 
GCGCAGAAAG TGGGACCCCG AGGCCCCCCT GGTCCCCAAG GGCCTCCTGG AAAACCCGGC 
AAGGATGGCA TTGATGGAGA AGCTGGCCCT CCAGGTCTGC CTGGCCTTCC AGGACCCAAA 
GGGACCTCAG GGAAGCCAGG GAAGCCGGGA GAGGCAGGAC TGCCAGGACT GCCTGGTGTA 
GATGGTCTGA CAGGGAGAGA TGGACCCGCA GGACCCAAAG GTGCCCCTGG AGAACGGGGA 
AGTCTAGGAC CCCCAGGGCC ACCAGGACTT GGGGGCAAAG GCCTCCCTGG ACCTCCTGGA 
GAGGCAGGAG TGAGTGGCCT CCCAGGTGGG ATTGGTCTAC GTGGCCCCCC GGGACCCTCT 
GGACTTCCAG GACTGCCTGG CCTCCCAGGA CCTCCTGGAC CTCCTGGAAA CCCTGGAGTC 
CTCCCTGAAG GTGCTACTGA TCTGCAGTGT CCCGCCATCT GCCCGCCAGG CCCTCCGGGA 
CCCCCAGGAA TGCCGGGGTT CAAGGGGCCT ACTGGCTACA AAGGGGAACA AGGAGAAGTT 
GGCAAAGATG GTGAGAAGGG TAGTCCTGGC CCCCCCGGGC CTCCTGGAAT CCCAGGCACC 
GTGGGGCTAC AGGGCCCACG AGGATTAAGA GGACTTCCAG GGCCACTCGG GCCCCCTGGG 
GACCGGGGTC CCATTGGGTT TCGGGGCCCC CCTGGGACCC CAGGAGCACC TGGGAAAGTG 
GGTGACAGGG GTGAAAGGGG ACCAGAAGGG TTCCGTGGCC CTAAGGGTGA CCTGGGCAGG 
CCTGGTCCCA AAGGAATCCC TGGAATGGCT GGGCCAGGCG GAGAACCAGG CATGCCAGGC 
AAGGATGGCA AAGATGGTGT GCCGGGACTT GATGGTGAGA AGGGAGAGGC TGGTCGCAAT 
GGTGGCCAAG GAGAGAAAGG CCCCAATGGG CTGCCGGGGC TCCCTGGACG AGCAGGGTCC 
AAAGGCGAGA AGGGAGAACC GGGTAGAACT GGCGAGCTGG GTGAGGCTGG CCCCTCTGGA 
GAGCCAGGTA TCCCTGGAGA TGTTGGTGTT CCAGGGGAGC GTGGTGAGGC TGGTCACAGG 
GGCTCCGTGG GAGCTCTTGG CCCACAAGGT CCTCCTGGTG CTCCTGGCAT CCGTGGCTTT 
CAGGGACAAA AAGGCAGCAC AGGAGACCCT GGCCTTCCGG GCCCCCAAGG CCTACGGGGA 
GATGTGGGTG ACCGGGTAAG GGTTGTTCTC TTGCACCTCC CTGCTCTAAC CAGTCTACAT 
AGACTCAAGC CAGCAGCAGC CCACTCCTTC CCACGTGGGT GGCAGGGATG GCAGCACCAA 
CTATGTGGAC AGGGTCCAGG AGGTGCCACA GGCCCTAAGG GAGACCAGGG CATTGCAGGT 
TCCGATGGTC TTCCAGGGGA CAAAGGCGAG CTGGGTCCTA ATGGCCCCGT TGGACAAAAA 
GGAGAGTCTG GCAGCCGAGG GGAACTGGGC CCCAAAGGCA TCCAGGGCCC CAATGGCACC 
AGTGGAGTCC AGGGTGTACC TGGTCCCCCA GGTCCACTGG GCCTCCAAGG TGTGCAGGGT 
GTCCCAGGCA TCACCGGGAA GCCTGGAGTT CCGGGCAAGG AAGCCAGTGA ACAGCGCATC 
AGGGAGCTAT GCGGGGGTAT GATCAGTGAG CAAATTGCAC AGTTGGCTGC ACACCTGAGG 
AAGCCCTTAG CACCAGGCTC CATCGGCAGG CCTGGTCCAG CTGGCCCCCC AGGCCCTCCA 
GGCCCTCCAG GCTCTATTGG CCACCCTGGC GCTCGGGGTC CCCCTGGATA CCGTGGTCCC 
ACTGGGGAAC TAGGAGATCC TGGACCAAGA GGGAGCCAGG GTGACAGAGG GGACAAGGGA 
GCAACAGGTG CAGGGCTGGA TGGGCCTGCT GGGGACCAGG GCTACCAAGG GCCTCAAGGT 
GTACCTGGCA TCAGCAAAGA TGGTCGAGAT GGTGCTCATG GTGAGCCTGG CCTTCCCGGT 
GATCCTGGCC TTCCTGGAGC TGCTGGTGCT CAGGGTACCC CAGGGATCTG CGACACTTCA 
GCCTGCCAAG GAGCTGTGTT AGGGGGAGGT GGGGAAAAGT CGGGTCCTCG GAGCTCATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Col9a3 ( NM_009936.2 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_034066.2 Mus musculus collagen, type IX, alpha 3 (Col9a3), mRNA.

Price & Availability↑

CloneID	OMu20656
Clone ID Related Accession (Same CDS sequence)	NM_009936.2
Accession Version	NM_009936.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2043bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-10-12
Organism	Mus musculus(house mouse)
Product	collagen alpha-3(IX) chain precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CK623954.1, AK030350.1 and AK038481.1. On Aug 16, 2006 this sequence version replaced NM_009936.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK030350.1, AF349718.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849375, SAMN00849383 [ECO:0000348] ##Evidence-Data-END##

ATGACCGGAG CGCCTGCCCT AGCCCTGCTG CTGCTGGGGC AGCTCCTGAC GGCCACCTCC 
GCGCAGAAAG TGGGACCCCG AGGCCCCCCT GGTCCCCAAG GGCCTCCTGG AAAACCCGGC 
AAGGATGGCA TTGATGGAGA AGCTGGCCCT CCAGGTCTGC CTGGCCTTCC AGGACCCAAA 
GGGACCTCAG GGAAGCCAGG GAAGCCGGGA GAGGCAGGAC TGCCAGGACT GCCTGGTGTA 
GATGGTCTGA CAGGGAGAGA TGGACCCGCA GGACCCAAAG GTGCCCCTGG AGAACGGGGA 
AGTCTAGGAC CCCCAGGGCC ACCAGGACTT GGGGGCAAAG GCCTCCCTGG ACCTCCTGGA 
GAGGCAGGAG TGAGTGGCCT CCCAGGTGGG ATTGGTCTAC GTGGCCCCCC GGGACCCTCT 
GGACTTCCAG GACTGCCTGG CCTCCCAGGA CCTCCTGGAC CTCCTGGAAA CCCTGGAGTC 
CTCCCTGAAG GTGCTACTGA TCTGCAGTGT CCCGCCATCT GCCCGCCAGG CCCTCCGGGA 
CCCCCAGGAA TGCCGGGGTT CAAGGGGCCT ACTGGCTACA AAGGGGAACA AGGAGAAGTT 
GGCAAAGATG GTGAGAAGGG TAGTCCTGGC CCCCCCGGGC CTCCTGGAAT CCCAGGCACC 
GTGGGGCTAC AGGGCCCACG AGGATTAAGA GGACTTCCAG GGCCACTCGG GCCCCCTGGG 
GACCGGGGTC CCATTGGGTT TCGGGGCCCC CCTGGGACCC CAGGAGCACC TGGGAAAGTG 
GGTGACAGGG GTGAAAGGGG ACCAGAAGGG TTCCGTGGCC CTAAGGGTGA CCTGGGCAGG 
CCTGGTCCCA AAGGAATCCC TGGAATGGCT GGGCCAGGCG GAGAACCAGG CATGCCAGGC 
AAGGATGGCA AAGATGGTGT GCCGGGACTT GATGGTGAGA AGGGAGAGGC TGGTCGCAAT 
GGTGGCCAAG GAGAGAAAGG CCCCAATGGG CTGCCGGGGC TCCCTGGACG AGCAGGGTCC 
AAAGGCGAGA AGGGAGAACC GGGTAGAACT GGCGAGCTGG GTGAGGCTGG CCCCTCTGGA 
GAGCCAGGTA TCCCTGGAGA TGTTGGTGTT CCAGGGGAGC GTGGTGAGGC TGGTCACAGG 
GGCTCCGTGG GAGCTCTTGG CCCACAAGGT CCTCCTGGTG CTCCTGGCAT CCGTGGCTTT 
CAGGGACAAA AAGGCAGCAC AGGAGACCCT GGCCTTCCGG GCCCCCAAGG CCTACGGGGA 
GATGTGGGTG ACCGGGGTCC AGGAGGTGCC ACAGGCCCTA AGGGAGACCA GGGCATTGCA 
GGTTCCGATG GTCTTCCAGG GGACAAAGGC GAGCTGGGTC CTAATGGCCC CGTTGGACAA 
AAAGGAGAGT CTGGCAGCCG AGGGGAACTG GGCCCCAAAG GCATCCAGGG CCCCAATGGC 
ACCAGTGGAG TCCAGGGTGT ACCTGGTCCC CCAGGTCCAC TGGGCCTCCA AGGTGTGCAG 
GGTGTCCCAG GCATCACCGG GAAGCCTGGA GTTCCGGGCA AGGAAGCCAG TGAACAGCGC 
ATCAGGGAGC TATGCGGGGG TATGATCAGT GAGCAAATTG CACAGTTGGC TGCACACCTG 
AGGAAGCCCT TAGCACCAGG CTCCATCGGC AGGCCTGGTC CAGCTGGCCC CCCAGGCCCT 
CCAGGCCCTC CAGGCTCTAT TGGCCACCCT GGCGCTCGGG GTCCCCCTGG ATACCGTGGT 
CCCACTGGGG AACTAGGAGA TCCTGGACCA AGAGGGAGCC AGGGTGACAG AGGGGACAAG 
GGAGCAACAG GTGCAGGGCT GGATGGGCCT GCTGGGGACC AGGGCTACCA AGGGCCTCAA 
GGTGTACCTG GCATCAGCAA AGATGGTCGA GATGGTGCTC ATGGTGAGCC TGGCCTTCCC 
GGTGATCCTG GCCTTCCTGG AGCTGCTGGT GCTCAGGGTA CCCCAGGGAT CTGCGACACT 
TCAGCCTGCC AAGGAGCTGT GTTAGGGGGA GGTGGGGAAA AGTCGGGTCC TCGGAGCTCA 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_034066.2
CDS	39..2081
Translation	MTGAPALALLLLGQLLTATSAQKVGPRGPPGPQGPPGKPGKDGIDGEAGPPGLPGLPGPKGTSGKPGKPGEAGLPGLPGVDGLTGRDGPAGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGLPGGIGLRGPPGPSGLPGLPGLPGPPGPPGNPGVLPEGATDLQCPAICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGSPGPPGPPGIPGTVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGTPGAPGKVGDRGERGPEGFRGPKGDLGRPGPKGIPGMAGPGGEPGMPGKDGKDGVPGLDGEKGEAGRNGGQGEKGPNGLPGLPGRAGSKGEKGEPGRTGELGEAGPSGEPGIPGDVGVPGERGEAGHRGSVGALGPQGPPGAPGIRGFQGQKGSTGDPGLPGPQGLRGDVGDRGPGGATGPKGDQGIAGSDGLPGDKGELGPNGPVGQKGESGSRGELGPKGIQGPNGTSGVQGVPGPPGPLGLQGVQGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGSQGDRGDKGATGAGLDGPAGDQGYQGPQGVPGISKDGRDGAHGEPGLPGDPGLPGAAGAQGTPGICDTSACQGAVLGGGGEKSGPRSS

Target ORF information:

RefSeq Version	NM_009936.2
Organism	Mus musculus(house mouse)
Definition	Mus musculus collagen, type IX, alpha 3 (Col9a3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_009936.2

ORF Insert Sequence:

ATGACCGGAG CGCCTGCCCT AGCCCTGCTG CTGCTGGGGC AGCTCCTGAC GGCCACCTCC 
GCGCAGAAAG TGGGACCCCG AGGCCCCCCT GGTCCCCAAG GGCCTCCTGG AAAACCCGGC 
AAGGATGGCA TTGATGGAGA AGCTGGCCCT CCAGGTCTGC CTGGCCTTCC AGGACCCAAA 
GGGACCTCAG GGAAGCCAGG GAAGCCGGGA GAGGCAGGAC TGCCAGGACT GCCTGGTGTA 
GATGGTCTGA CAGGGAGAGA TGGACCCGCA GGACCCAAAG GTGCCCCTGG AGAACGGGGA 
AGTCTAGGAC CCCCAGGGCC ACCAGGACTT GGGGGCAAAG GCCTCCCTGG ACCTCCTGGA 
GAGGCAGGAG TGAGTGGCCT CCCAGGTGGG ATTGGTCTAC GTGGCCCCCC GGGACCCTCT 
GGACTTCCAG GACTGCCTGG CCTCCCAGGA CCTCCTGGAC CTCCTGGAAA CCCTGGAGTC 
CTCCCTGAAG GTGCTACTGA TCTGCAGTGT CCCGCCATCT GCCCGCCAGG CCCTCCGGGA 
CCCCCAGGAA TGCCGGGGTT CAAGGGGCCT ACTGGCTACA AAGGGGAACA AGGAGAAGTT 
GGCAAAGATG GTGAGAAGGG TAGTCCTGGC CCCCCCGGGC CTCCTGGAAT CCCAGGCACC 
GTGGGGCTAC AGGGCCCACG AGGATTAAGA GGACTTCCAG GGCCACTCGG GCCCCCTGGG 
GACCGGGGTC CCATTGGGTT TCGGGGCCCC CCTGGGACCC CAGGAGCACC TGGGAAAGTG 
GGTGACAGGG GTGAAAGGGG ACCAGAAGGG TTCCGTGGCC CTAAGGGTGA CCTGGGCAGG 
CCTGGTCCCA AAGGAATCCC TGGAATGGCT GGGCCAGGCG GAGAACCAGG CATGCCAGGC 
AAGGATGGCA AAGATGGTGT GCCGGGACTT GATGGTGAGA AGGGAGAGGC TGGTCGCAAT 
GGTGGCCAAG GAGAGAAAGG CCCCAATGGG CTGCCGGGGC TCCCTGGACG AGCAGGGTCC 
AAAGGCGAGA AGGGAGAACC GGGTAGAACT GGCGAGCTGG GTGAGGCTGG CCCCTCTGGA 
GAGCCAGGTA TCCCTGGAGA TGTTGGTGTT CCAGGGGAGC GTGGTGAGGC TGGTCACAGG 
GGCTCCGTGG GAGCTCTTGG CCCACAAGGT CCTCCTGGTG CTCCTGGCAT CCGTGGCTTT 
CAGGGACAAA AAGGCAGCAC AGGAGACCCT GGCCTTCCGG GCCCCCAAGG CCTACGGGGA 
GATGTGGGTG ACCGGGGTCC AGGAGGTGCC ACAGGCCCTA AGGGAGACCA GGGCATTGCA 
GGTTCCGATG GTCTTCCAGG GGACAAAGGC GAGCTGGGTC CTAATGGCCC CGTTGGACAA 
AAAGGAGAGT CTGGCAGCCG AGGGGAACTG GGCCCCAAAG GCATCCAGGG CCCCAATGGC 
ACCAGTGGAG TCCAGGGTGT ACCTGGTCCC CCAGGTCCAC TGGGCCTCCA AGGTGTGCAG 
GGTGTCCCAG GCATCACCGG GAAGCCTGGA GTTCCGGGCA AGGAAGCCAG TGAACAGCGC 
ATCAGGGAGC TATGCGGGGG TATGATCAGT GAGCAAATTG CACAGTTGGC TGCACACCTG 
AGGAAGCCCT TAGCACCAGG CTCCATCGGC AGGCCTGGTC CAGCTGGCCC CCCAGGCCCT 
CCAGGCCCTC CAGGCTCTAT TGGCCACCCT GGCGCTCGGG GTCCCCCTGG ATACCGTGGT 
CCCACTGGGG AACTAGGAGA TCCTGGACCA AGAGGGAGCC AGGGTGACAG AGGGGACAAG 
GGAGCAACAG GTGCAGGGCT GGATGGGCCT GCTGGGGACC AGGGCTACCA AGGGCCTCAA 
GGTGTACCTG GCATCAGCAA AGATGGTCGA GATGGTGCTC ATGGTGAGCC TGGCCTTCCC 
GGTGATCCTG GCCTTCCTGG AGCTGCTGGT GCTCAGGGTA CCCCAGGGAT CTGCGACACT 
TCAGCCTGCC AAGGAGCTGT GTTAGGGGGA GGTGGGGAAA AGTCGGGTCC TCGGAGCTCA 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development.
Development (Cambridge, England)144(17)3177-3188(2017 09)
Rutledge EA,Benazet JD,McMahon AP

Early changes in morphology, bone mineral density and matrix composition of vertebrae lead to disc degeneration in aged collagen IX -/- mice.
Matrix biology : journal of the International Society for Matrix Biology49132-143(2016 Jan)
Kamper M,Hamann N,Prein C,Clausen-Schaumann H,Farkas Z,Aszodi A,Niehoff A,Paulsson M,Zaucke F

A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.
Neuron83(2)309-323(2014 Jul)
Thompson CL,Ng L,Menon V,Martinez S,Lee CK,Glattfelder K,Sunkin SM,Henry A,Lau C,Dang C,Garcia-Lopez R,Martinez-Ferre A,Pombero A,Rubenstein JLR,Wakeman WB,Hohmann J,Dee N,Sodt AJ,Young R,Smith K,Nguyen TN,Kidney J,Kuan L,Jeromin A,Kaykas A,Miller J,Page D,Orta G,Bernard A,Riley Z,Smith S,Wohnoutka P,Hawrylycz MJ,Puelles L,Jones AR

Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates.
Development (Cambridge, England)140(22)4633-44(2013 Nov)
Miller JA,Nathanson J,Franjic D,Shim S,Dalley RA,Shapouri S,Smith KA,Sunkin SM,Bernard A,Bennett JL,Lee CK,Hawrylycz MJ,Jones AR,Amaral DG,?estan N,Gage FH,Lein ES

Comparative proteomic analysis of normal and collagen IX null mouse cartilage reveals altered extracellular matrix composition and novel components of the collagen IX interactome.
The Journal of biological chemistry288(19)13481-92(2013 May)
Brachvogel B,Zaucke F,Dave K,Norris EL,Stermann J,Dayakli M,Koch M,Gorman JJ,Bateman JF,Wilson R

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Col9a3 cDNA ORF clone, Mus musculus(house mouse)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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Services & Products

見積依頼

Eメール

電話

FAX

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