cldnc cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	cldnc
Entrez Gene ID	81582
Full Name	claudin c
General protein information	Preferred Names claudin c Names claudin-9
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_131764.1	NP_571839.1	claudin-9

Pathways from BioSystems

Homologies

	CLDN9	XP_001088610.1
Rattus norvegicus (Norway rat)	Cldn9	NP_001011889.1
Danio rerio (zebrafish)	cldnc	NP_571839.1
Bos taurus (cattle)	CLDN9	XP_002697981.1
Homo sapiens (human)	CLDN9	NP_066192.1
Pan troglodytes (chimpanzee)	CLDN9	XP_003314989.1
Mus musculus (house mouse)	Cldn9	NP_064689.2
Canis lupus familiaris (dog)	CLDN9	XP_005621712.1

Gene Ontology
Bibliography

Related articles in PubMed

Biological outcome and mapping of total factor cascades in response to HIF induction during regenerative angiogenesis.
Khatib AM, Lahlil R, Hagedorn M, Delomenie C, Christophe O, Denis C, Siegfried G
Oncotarget7(11)12102-20(2016 Mar)

The basal function of teleost prolactin as a key regulator on ion uptake identified with zebrafish knockout models.
Shu Y, Lou Q, Dai Z, Dai X, He J, Hu W, Yin Z
Scientific reports618597(2016 Jan)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Observation of the middle intestinal tight junction structure, cloning and studying tissue distribution of the four Claudin genes of the grass carp (Ctenopharyngodon idellus).
Xu F, Ye YT, Cai CF, Wu P, Song L, Liu M, Yao LJ, Dong JJ, Huang YW, Gong Z, Qin J, Song L
Fish physiology and biochemistry40(6)1783-92(2014 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following cldnc gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cldnc cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa00776	NM_131764.1 Latest version!	Danio rerio claudin c (cldnc), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

cldnc ( NM_131764.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_571839.1 Danio rerio claudin c (cldnc), mRNA.

Price & Availability↑

CloneID	ODa00776
Clone ID Related Accession (Same CDS sequence)	NM_131764.1
Accession Version	NM_131764.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 657bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-07-20
Organism	Danio rerio(zebrafish)
Product	claudin-9
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF359432.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF359432.1 [ECO:0000332] ##Evidence-Data-END##

ATGGCGTCTT TTGGTTTGGA GTTAGTAGGT GTCACGCTCT CAGTCCTTGG CTGGATTCTC 
AACATTGTTT GCTGTGCTTT GCCCATGTGG AGGGTCACGG CGTTCATCGG CACCAATATC 
GTCACAGCAC AGGTGTACTG GGAGGGAATC TGGATGAGCT GTGTGGTTCA AAGCACCGGA 
CAGATGCAAT GTAAAGTCTA TGACTCCATG CTGGCTCTTC CTGCAGATCT ACAGGCGGCT 
CGCGCTCTGG TGGTGGTGGC CATCATTGTC GGTGTCCTTG CGCTTTTTGT GGCTATTGTG 
GGAGCCAAAT GCACCAACTG CATTGAGGAG GAAGCAGCCA AAGCCCGTGT GATGATCAGC 
TCTGGAGCCG CTTTCATAAC TGCTTCAGTC TTGCAGCTTA TTCCTGTGTG CTGGTCTGCA 
CATACGGTCA TTCTTGAGTT CTACAGCCCG CTGGTACCAG AAGCTCAGAA GATGGAAATT 
GGAGCATCGC TGTATCTGGG CTGGGCTGCT TCGGCAATGT TGCTTGTTGG AGGATCAATA 
CTGTGCTGCA GTTGCCCACC AAAAGATGAG ACGAGGTACC CTCCGCAAAG TCGTATCGCC 
TATTCAGCCC ACCACTCAGT GGCTCCAAGT ACCTATAACA AGAGAGACTA TGTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_571839.1
CDS	316..972
Translation	MASFGLELVGVTLSVLGWILNIVCCALPMWRVTAFIGTNIVTAQVYWEGIWMSCVVQSTGQMQCKVYDSMLALPADLQAARALVVVAIIVGVLALFVAIVGAKCTNCIEEEAAKARVMISSGAAFITASVLQLIPVCWSAHTVILEFYSPLVPEAQKMEIGASLYLGWAASAMLLVGGSILCCSCPPKDETRYPPQSRIAYSAHHSVAPSTYNKRDYV

Target ORF information:

RefSeq Version	NM_131764.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio claudin c (cldnc), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_131764.1

ORF Insert Sequence:

ATGGCGTCTT TTGGTTTGGA GTTAGTAGGT GTCACGCTCT CAGTCCTTGG CTGGATTCTC 
AACATTGTTT GCTGTGCTTT GCCCATGTGG AGGGTCACGG CGTTCATCGG CACCAATATC 
GTCACAGCAC AGGTGTACTG GGAGGGAATC TGGATGAGCT GTGTGGTTCA AAGCACCGGA 
CAGATGCAAT GTAAAGTCTA TGACTCCATG CTGGCTCTTC CTGCAGATCT ACAGGCGGCT 
CGCGCTCTGG TGGTGGTGGC CATCATTGTC GGTGTCCTTG CGCTTTTTGT GGCTATTGTG 
GGAGCCAAAT GCACCAACTG CATTGAGGAG GAAGCAGCCA AAGCCCGTGT GATGATCAGC 
TCTGGAGCCG CTTTCATAAC TGCTTCAGTC TTGCAGCTTA TTCCTGTGTG CTGGTCTGCA 
CATACGGTCA TTCTTGAGTT CTACAGCCCG CTGGTACCAG AAGCTCAGAA GATGGAAATT 
GGAGCATCGC TGTATCTGGG CTGGGCTGCT TCGGCAATGT TGCTTGTTGG AGGATCAATA 
CTGTGCTGCA GTTGCCCACC AAAAGATGAG ACGAGGTACC CTCCGCAAAG TCGTATCGCC 
TATTCAGCCC ACCACTCAGT GGCTCCAAGT ACCTATAACA AGAGAGACTA TGTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Biological outcome and mapping of total factor cascades in response to HIF induction during regenerative angiogenesis.
Oncotarget7(11)12102-20(2016 Mar)
Khatib AM,Lahlil R,Hagedorn M,Delomenie C,Christophe O,Denis C,Siegfried G

The basal function of teleost prolactin as a key regulator on ion uptake identified with zebrafish knockout models.
Scientific reports618597(2016 Jan)
Shu Y,Lou Q,Dai Z,Dai X,He J,Hu W,Yin Z

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Observation of the middle intestinal tight junction structure, cloning and studying tissue distribution of the four Claudin genes of the grass carp (Ctenopharyngodon idellus).
Fish physiology and biochemistry40(6)1783-92(2014 Dec)
Xu F,Ye YT,Cai CF,Wu P,Song L,Liu M,Yao LJ,Dong JJ,Huang YW,Gong Z,Qin J,Song L