cldnd1b cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	cldnd1b
Entrez Gene ID	554386
Full Name	claudin domain containing 1b
Synonyms	zgc:100913
General protein information	Preferred Names claudin domain containing 1b Names claudin domain containing 1b
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001161597.1	NP_001155069.1	claudin domain containing 1b

Pathways from BioSystems

Homologies

Homo sapiens (human)	CLDND1	NP_001035272.1
Pan troglodytes (chimpanzee)	CLDND1	XP_516613.3
Bos taurus (cattle)	CLDND1	NP_001193286.1
Gallus gallus (chicken)	CLDND1	NP_001012838.1
Danio rerio (zebrafish)	zgc:64190	NP_956255.1
Mus musculus (house mouse)	Cldn25	NP_001239379.1
Danio rerio (zebrafish)	LOC554386	NP_001155069.1
	CLDND1	XP_001087565.2
Canis lupus familiaris (dog)	CLDND1	XP_005639428.1
Rattus norvegicus (Norway rat)	Cldnd1	NP_001006956.1
Xenopus tropicalis (tropical clawed frog)	cldnd1	NP_001016259.1

Gene Ontology
Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis.
Lo J, Lee S, Xu M, Liu F, Ruan H, Eun A, He Y, Ma W, Wang W, Wen Z, Peng J
Genome research13(3)455-66(2003 Mar)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following cldnd1b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cldnd1b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa33642	NM_001161597.1 Latest version!	Danio rerio claudin domain containing 1b (cldnd1b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

cldnd1b ( NM_001161597.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001155069.1 Danio rerio claudin domain containing 1b (cldnd1b), mRNA.

Price & Availability↑

CloneID	ODa33642
Clone ID Related Accession (Same CDS sequence)	NM_001161597.1
Accession Version	NM_001161597.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 762bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	claudin domain containing 1b
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BX323839.13. On or before Jun 7, 2016 this sequence version replaced NM_001003751.1, XM_696446.2. ##Evidence-Data-START## Transcript exon combination :: GFIL01022700.1, BC079497.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGTGGACA ACCGTTACGC CACAGCGCTG GTGATCGGCT CTGTGTTGAG CCTGCTTGCC 
ACTGTCTATC TGTCTGTTGC AATGGGCACT CAGCACTGGT TCCAGTACCA CAGCCAGCCG 
GCCAGCAACG ACATCAACAA CGGCTCAGAC CTCCAGAACC TCCGGCTGGA CTTTGAGGGG 
GAAGATGTGG ATGAGATGAG CTACAGTAAA GCTCTGTTCC AGTTGAACGG CACGCTGGGT 
CTGTGGTGGC GTTGCATTCG GGTGCATCAA GACTCGCATT GGTTTAAAGC ACCTGATCCA 
GTGATGGTGA CTAAATGTCA GGCCTTTACT TTGCAGCAGC AGTGGGAATC TAAGTATAAA 
TCACCTGGAA ATATCAACAC CGGAGAAGAT CTGCTGCGTA CATACCTGTG GAAGTGTCAG 
TTCCTGCTGC CGCTGATCTC CGTGGGTTTG GTGTTTCTCG CGGCATTAAT CGGAGTGTGT 
GCCTGTCTGT GTCGCAGTAT TACTCCAACA CTGTTCGTAG GGCTGCTGCA TCTGATGGCT 
GGCCTGTGTT CCCTGGGGAC CGTTTGCTGT TTCCTCACGG GACTGCATTT GCTTCATGAT 
ATATCAGAGC TGCCCGAAGG AATGGACTAT TCTCCAGGCT GGTCCTTGTT TTTGGCGCTG 
GTGTCGTCTC CGCTTCAGGT CATGGCGGCT GCGCTTTTCA TATGGGCTGC GAGGAGCCAC 
CGCCAACACT ACACTCGAAT GACAGCCTAC AGAGTCGCCT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001155069.1
CDS	232..993
Translation	MVDNRYATALVIGSVLSLLATVYLSVAMGTQHWFQYHSQPASNDINNGSDLQNLRLDFEGEDVDEMSYSKALFQLNGTLGLWWRCIRVHQDSHWFKAPDPVMVTKCQAFTLQQQWESKYKSPGNINTGEDLLRTYLWKCQFLLPLISVGLVFLAALIGVCACLCRSITPTLFVGLLHLMAGLCSLGTVCCFLTGLHLLHDISELPEGMDYSPGWSLFLALVSSPLQVMAAALFIWAARSHRQHYTRMTAYRVA

Target ORF information:

RefSeq Version	NM_001161597.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio claudin domain containing 1b (cldnd1b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001161597.1

ORF Insert Sequence:

ATGGTGGACA ACCGTTACGC CACAGCGCTG GTGATCGGCT CTGTGTTGAG CCTGCTTGCC 
ACTGTCTATC TGTCTGTTGC AATGGGCACT CAGCACTGGT TCCAGTACCA CAGCCAGCCG 
GCCAGCAACG ACATCAACAA CGGCTCAGAC CTCCAGAACC TCCGGCTGGA CTTTGAGGGG 
GAAGATGTGG ATGAGATGAG CTACAGTAAA GCTCTGTTCC AGTTGAACGG CACGCTGGGT 
CTGTGGTGGC GTTGCATTCG GGTGCATCAA GACTCGCATT GGTTTAAAGC ACCTGATCCA 
GTGATGGTGA CTAAATGTCA GGCCTTTACT TTGCAGCAGC AGTGGGAATC TAAGTATAAA 
TCACCTGGAA ATATCAACAC CGGAGAAGAT CTGCTGCGTA CATACCTGTG GAAGTGTCAG 
TTCCTGCTGC CGCTGATCTC CGTGGGTTTG GTGTTTCTCG CGGCATTAAT CGGAGTGTGT 
GCCTGTCTGT GTCGCAGTAT TACTCCAACA CTGTTCGTAG GGCTGCTGCA TCTGATGGCT 
GGCCTGTGTT CCCTGGGGAC CGTTTGCTGT TTCCTCACGG GACTGCATTT GCTTCATGAT 
ATATCAGAGC TGCCCGAAGG AATGGACTAT TCTCCAGGCT GGTCCTTGTT TTTGGCGCTG 
GTGTCGTCTC CGCTTCAGGT CATGGCGGCT GCGCTTTTCA TATGGGCTGC GAGGAGCCAC 
CGCCAACACT ACACTCGAAT GACAGCCTAC AGAGTCGCCT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis.
Genome research13(3)455-66(2003 Mar)
Lo J,Lee S,Xu M,Liu F,Ruan H,Eun A,He Y,Ma W,Wang W,Wen Z,Peng J