hax1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	hax1
Entrez Gene ID	436609
Full Name	HCLS1 associated protein X-1
Synonyms	zgc:92196
General protein information	Preferred Names HCLS1 associated protein X-1 Names HCLS1-associated protein X-1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001002337.1	NP_001002337.1	HCLS1-associated protein X-1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	HAX1	NP_001039418.2
Danio rerio (zebrafish)	hax1	NP_001002337.1
	HAX1	XP_002801842.1
Pan troglodytes (chimpanzee)	HAX1	XP_001150932.1
Canis lupus familiaris (dog)	HAX1	XP_005622847.1
Mus musculus (house mouse)	Hax1	NP_035956.1
Xenopus tropicalis (tropical clawed frog)	LOC100485912	XP_002943156.2
Homo sapiens (human)	HAX1	NP_006109.2
Rattus norvegicus (Norway rat)	Hax1	NP_853658.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus.
Ju Z, Wells MC, Martinez A, Hazlewood L, Walter RB
In silico biology5(5-6)439-63(2005)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following hax1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the hax1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa34853	NM_001002337.1 Latest version!	Danio rerio HCLS1 associated protein X-1 (hax1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

hax1 ( NM_001002337.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001002337.1 Danio rerio HCLS1 associated protein X-1 (hax1), mRNA.

Price & Availability↑

CloneID	ODa34853
Clone ID Related Accession (Same CDS sequence)	NM_001002337.1
Accession Version	NM_001002337.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 861bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	HCLS1-associated protein X-1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC075929.1. ##Evidence-Data-START## Transcript exon combination :: BC075929.1, EH450270.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGAGCGTTT TTGATCTGTT TCGTGGGTTT TTCGGGGTTC CCGGAGGTCA TTATCGAGAA 
GATGGCCGCA GGGACCCCTT CTTTGATGGA ATGATTCATG AAGATGATGA TGATGAAGAC 
GAGGATGACT TTAACAGACC CCATCGGGAT CCGTTTGACG ATGCCTTCAG GTTTGGATTC 
AGTTTCGGTC CAGGCGGGGC ACGCTTTGAA GAGCCTCAGA TGTTCGGCCA GATCTTCAGA 
GACATGGAGG AGATGTTTGC TGGTCTGGGA CGCTTTGATG AGCGACATGG ATTTGGACCG 
AGAGGTTTCC CGTCAATAGA AGCTCCACCT CCACAGGAAG GAGTTGAGAA AGGCAGGAGT 
GGGACAGGAA GTGGGAATCC CATCAGAGAT TTCATGTTGA AGTCTCCTGA CCGCTCACCT 
AAAGATCCAG AGCACAGAGA GGATTCTCCA CCAAATCATC CTCACAGGAG GCCTTTCTCA 
AAGTTCAACG ATATTTGGAA AGATGGACTG TTAAAACCAA AGGGGGAAGA CAAAAGGGAG 
GATGGAGATC TGGACTCACA GGTGTCTTCA GGTGGACTGG ACCAGATCTT GAAAGATCCA 
GCACCTTCAC AGCCAAAAAC AAGGTCATTT TTTAAGTCTG TCAGCGTCAC CAAGGTGGTC 
CGACCGGATG GAACTGTAGA AGAACGGCGA ACAGTCAGAG ATGGAGAAGG TAATGAAGAG 
ACGACCGTGA CCATCTCAGA AAGGCCAGGT GGGCAAGATA GGCCAGTCCT GGATCAGTCT 
GGTCCTTTAA TGCCAGGTGG TTCTGACATG CAGGATGATT TCTCCATGTT TTCCAAGTTC 
TTCAGAGGCT TTCGAAGTTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001002337.1
CDS	63..923
Translation	MSVFDLFRGFFGVPGGHYREDGRRDPFFDGMIHEDDDDEDEDDFNRPHRDPFDDAFRFGFSFGPGGARFEEPQMFGQIFRDMEEMFAGLGRFDERHGFGPRGFPSIEAPPPQEGVEKGRSGTGSGNPIRDFMLKSPDRSPKDPEHREDSPPNHPHRRPFSKFNDIWKDGLLKPKGEDKREDGDLDSQVSSGGLDQILKDPAPSQPKTRSFFKSVSVTKVVRPDGTVEERRTVRDGEGNEETTVTISERPGGQDRPVLDQSGPLMPGGSDMQDDFSMFSKFFRGFRS

Target ORF information:

RefSeq Version	NM_001002337.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio HCLS1 associated protein X-1 (hax1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001002337.1

ORF Insert Sequence:

ATGAGCGTTT TTGATCTGTT TCGTGGGTTT TTCGGGGTTC CCGGAGGTCA TTATCGAGAA 
GATGGCCGCA GGGACCCCTT CTTTGATGGA ATGATTCATG AAGATGATGA TGATGAAGAC 
GAGGATGACT TTAACAGACC CCATCGGGAT CCGTTTGACG ATGCCTTCAG GTTTGGATTC 
AGTTTCGGTC CAGGCGGGGC ACGCTTTGAA GAGCCTCAGA TGTTCGGCCA GATCTTCAGA 
GACATGGAGG AGATGTTTGC TGGTCTGGGA CGCTTTGATG AGCGACATGG ATTTGGACCG 
AGAGGTTTCC CGTCAATAGA AGCTCCACCT CCACAGGAAG GAGTTGAGAA AGGCAGGAGT 
GGGACAGGAA GTGGGAATCC CATCAGAGAT TTCATGTTGA AGTCTCCTGA CCGCTCACCT 
AAAGATCCAG AGCACAGAGA GGATTCTCCA CCAAATCATC CTCACAGGAG GCCTTTCTCA 
AAGTTCAACG ATATTTGGAA AGATGGACTG TTAAAACCAA AGGGGGAAGA CAAAAGGGAG 
GATGGAGATC TGGACTCACA GGTGTCTTCA GGTGGACTGG ACCAGATCTT GAAAGATCCA 
GCACCTTCAC AGCCAAAAAC AAGGTCATTT TTTAAGTCTG TCAGCGTCAC CAAGGTGGTC 
CGACCGGATG GAACTGTAGA AGAACGGCGA ACAGTCAGAG ATGGAGAAGG TAATGAAGAG 
ACGACCGTGA CCATCTCAGA AAGGCCAGGT GGGCAAGATA GGCCAGTCCT GGATCAGTCT 
GGTCCTTTAA TGCCAGGTGG TTCTGACATG CAGGATGATT TCTCCATGTT TTCCAAGTTC 
TTCAGAGGCT TTCGAAGTTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus.
In silico biology5(5-6)439-63(2005)
Ju Z,Wells MC,Martinez A,Hazlewood L,Walter RB