smpx cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	smpx
Entrez Gene ID	431732
Full Name	small muscle protein, X-linked
Synonyms	zgc:91881
General protein information	Preferred Names small muscle protein, X-linked Names small muscular protein
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_009297458.2	XP_009295733.1	small muscular protein isoform X1
XM_005162767.3	XP_005162824.1	small muscular protein isoform X1
XM_005162766.3	XP_005162823.1	small muscular protein isoform X1
NM_001002185.1	NP_001002185.1	small muscular protein
XM_009297459.3	XP_009295734.1	small muscular protein isoform X1
XM_009297459.2	XP_009295734.1	small muscular protein isoform X1
XM_005162767.4	XP_005162824.1	small muscular protein isoform X1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	SMPX	NP_001032715.1
Rattus norvegicus (Norway rat)	Smpx	NP_445847.1
Homo sapiens (human)	SMPX	NP_055147.1
Mus musculus (house mouse)	Smpx	NP_001239520.1
Xenopus tropicalis (tropical clawed frog)	smpx	NP_001072253.1
Gallus gallus (chicken)	SMPX	XP_003640562.1
Danio rerio (zebrafish)	smpx	NP_001002185.1
Pan troglodytes (chimpanzee)	SMPX	XP_001142063.2
	SMPX	XP_001086790.2
Canis lupus familiaris (dog)	SMPX	XP_854567.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, Ledin J, Burgess SM
Genome research25(7)1030-42(2015 Jul)

Reconstruction of a 450-My-old ancestral vertebrate protokaryotype.
Kohn M, H?gel J, Vogel W, Minich P, Kehrer-Sawatzki H, Graves JA, Hameister H
Trends in genetics : TIG22(4)203-10(2006 Apr)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following smpx gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the smpx cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa28644	NM_001002185.1 Latest version!	Danio rerio small muscle protein X-linked (smpx), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa28644	XM_009297458.2 Latest version!	Danio rerio small muscle protein, X-linked (smpx), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa28644	XM_005162766.3 Latest version!	Danio rerio small muscle protein, X-linked (smpx), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa28644	XM_005162767.4 Latest version!	Danio rerio small muscle protein, X-linked (smpx), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa28644	XM_009297459.3 Latest version!	Danio rerio small muscle protein, X-linked (smpx), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
View Old Accession Versions >>
ODa28644	XM_009297459.2	Danio rerio small muscle protein, X-linked (smpx), transcript variant X4, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa28644	XM_005162767.3	Danio rerio small muscle protein, X-linked (smpx), transcript variant X3, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
Hide Old Accession Versions >>

ORF Online Only Promotion

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2-4 Clone	40% OFF
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

smpx ( NM_001002185.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001002185.1 Danio rerio small muscle protein X-linked (smpx), mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	NM_001002185.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-05-12
Organism	Danio rerio(zebrafish)
Product	small muscular protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC074039.1. ##Evidence-Data-START## Transcript exon combination :: BC074039.1, EH435435.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505371 [ECO:0000348] ##Evidence-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001002185.1
CDS	109..360
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	NM_001002185.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio small muscle protein X-linked (smpx), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001002185.1

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

smpx ( XM_009297458.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_009295733.1 Danio rerio small muscle protein, X-linked (smpx), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	XM_009297458.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	small muscular protein isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009297458.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009295733.1
CDS	261..512
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	XM_009297458.2
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio small muscle protein, X-linked (smpx), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009297458.2

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

smpx ( XM_005162767.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005162824.1 Danio rerio small muscle protein, X-linked (smpx), transcript variant X3, mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	XM_005162767.3	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	small muscular protein isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005162767.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005162824.1
CDS	112..363
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	XM_005162767.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio small muscle protein, X-linked (smpx), transcript variant X3, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005162767.3

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

smpx ( XM_005162766.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005162823.1 Danio rerio small muscle protein, X-linked (smpx), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	XM_005162766.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	small muscular protein isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005162766.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005162823.1
CDS	265..516
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	XM_005162766.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio small muscle protein, X-linked (smpx), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005162766.3

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

smpx ( XM_009297459.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_009295734.1 Danio rerio small muscle protein, X-linked (smpx), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	XM_009297459.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	small muscular protein isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009297459.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009295734.1
CDS	105..356
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	XM_009297459.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio small muscle protein, X-linked (smpx), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009297459.3

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

smpx ( XM_009297459.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_009295734.1 Danio rerio small muscle protein, X-linked (smpx), transcript variant X4, mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	XM_009297459.2	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	small muscular protein isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009297459.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009295734.1
CDS	111..362
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	XM_009297459.2
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio small muscle protein, X-linked (smpx), transcript variant X4, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009297459.2

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

smpx ( XM_005162767.4 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005162824.1 Danio rerio small muscle protein, X-linked (smpx), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa28644
Clone ID Related Accession (Same CDS sequence)	XM_009297458.2 , XM_005162767.3 , XM_005162766.3 , NM_001002185.1 , XM_009297459.3 , XM_009297459.2 , XM_005162767.4
Accession Version	XM_005162767.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 252bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	small muscular protein isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005162767.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005162824.1
CDS	138..389
Translation	MSKQPSSNVKALQANLNIPMGALRPGAGHPVKRREDTVETEEVSPVTPEEKKPLPGAVKLPGPAVNLSELQNVKSELRWVTKD

Target ORF information:

RefSeq Version	XM_005162767.4
Organism	Danio rerio(zebrafish)
Definition	Danio rerio small muscle protein, X-linked (smpx), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005162767.4

ORF Insert Sequence:

ATGTCAAAAC AGCCGTCGTC CAACGTCAAA GCCCTGCAGG CCAACCTTAA TATCCCGATG 
GGGGCTCTGC GTCCTGGAGC GGGACATCCT GTGAAGAGGA GAGAAGATAC AGTAGAAACA 
GAAGAGGTGT CTCCAGTCAC TCCAGAAGAG AAGAAGCCTC TGCCTGGAGC TGTGAAACTC 
CCTGGTCCCG CTGTCAACCT CTCCGAACTC CAAAATGTAA AGAGTGAACT CAGATGGGTC 
ACCAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Genome research25(7)1030-42(2015 Jul)
Varshney GK,Pei W,LaFave MC,Idol J,Xu L,Gallardo V,Carrington B,Bishop K,Jones M,Li M,Harper U,Huang SC,Prakash A,Chen W,Sood R,Ledin J,Burgess SM

Reconstruction of a 450-My-old ancestral vertebrate protokaryotype.
Trends in genetics : TIG22(4)203-10(2006 Apr)
Kohn M,H?gel J,Vogel W,Minich P,Kehrer-Sawatzki H,Graves JA,Hameister H

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smpx cDNA ORF clone, Danio rerio(zebrafish)

Gene

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Target ORF information:

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ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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