ORF » Species Summary » Danio rerio » ss18 cDNA ORF clone

ss18 cDNA ORF clone, Danio rerio(zebrafish)

The following ss18 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ss18 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa00930 NM_199744.2
Latest version!		 Danio rerio SS18 subunit of BAF chromatin remodeling complex (ss18), transcript variant 1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00
ODa00938 NM_001291325.1
Latest version!		 Danio rerio SS18 subunit of BAF chromatin remodeling complex (ss18), transcript variant 2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $174.30
$249.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    ss18 ( NM_199744.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956038.1 Danio rerio SS18 subunit of BAF chromatin remodeling complex (ss18), transcript variant 1, mRNA.
    Price & Availability↑
    CloneID ODa00930
    Clone ID Related Accession (Same CDS sequence) NM_199744.2
    Accession Version NM_199744.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1107bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-04-07
    Organism Danio rerio(zebrafish)
    Product protein SSXT isoform 1
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH553447.1, EH561714.1 and FP101911.9. On Apr 4, 2014 this sequence version replaced NM_199744.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC047188.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476741 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTCTGTGG CTTTTGCACC GCACCGGCAG CGTGCCAAGG GCGATATAAC GCCTGCCGGG 
    ATACAGAAGT TACTGGATGA AAACAATCAG CTGATTCAGT GCATCATGGA CTTCCAGAGT 
    AAAGGAAAAA CAGCTGAATG TTCACACTAC CAACAGATGC TGCACAGAAA TCTGGTGTAT 
    TTGGCGACAA TAGCAGACTC TAATCAGAAC ATGCAGTCTC TGCTCCCTGC GCCGCCCACT 
    CAGAACATGC CTATGAATCA GAGCGGAGCC ACTCCTCAGC TGCCCCACGG TCACAGTATG 
    CCCTCAGAGG GTCCCACCGC CCCACACATG CAGAGCCAGA TGAACGGCCA GATGCCAGGT 
    CCAAATCACA TGTCGATGCA GGGTCCGGGG CCCAACCAAT CATCCAGCAT ACCCAGCGGC 
    TCCATGAACA TACCACCCAG CAGCCACGGC TCCATGGGGG CTTATAACCA CGCCGTGCCC 
    TCCTCACAGG GCATACAGTC ACAGGGGCAG ATGAACATCA ACCAGGGGCA GCCCATGGGC 
    AATTATGGCC CTCGACCCAA CATGAACATG CAGCCCAATC AGGGGCCTAT GATGCACCAG 
    CAGGCTCCTT CCCAGCAGTA CAACATGCCC CCCTCTGGTG GCAGCGGGCA GCATTACCAG 
    GGGCAGCAGA ACCCCATGGG CATGATGGGG CAAGGCAATC ACGTGATGGG GCAGAGGCCA 
    ATGCCGCCAT ACAGGCCACC ACATCAAGGA CCTCCTCAGC AATATCCCGG TCAGGATGAA 
    TATTATACGG AGCAATACAG CCATGGAGGA CAGGGGGCAC CAGAGGGAAA CACACAGTAT 
    GGTCAGCAGC AGGAGGCATA TCAGCAGGGC CCGCCTCAGC AGCAGGGTTA CCCACCGCAG 
    CAGCAGTACA GCGGGCAGCA GGGATACCCG GGACAGCAGC AGGGCTACGG TCCATCACAA 
    GGCGCTCCAA GTCAGTACCC AAACTACCCG CAGAGTCAAG GGCAGCAGTA TTCAGCCTAC 
    AGAGCCCCGC AACCCGGACC ACCACAGGGA CAACCACAGC GCCCGTATGC TTTTGACCAG 
    GGTCAGTATG GAAACTACCA GCAGTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_956038.1
    CDS127..1233
    Translation

    Target ORF information:

    RefSeq Version NM_199744.2
    Organism Danio rerio(zebrafish)
    Definition Danio rerio SS18 subunit of BAF chromatin remodeling complex (ss18), transcript variant 1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_199744.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTCTGTGG CTTTTGCACC GCACCGGCAG CGTGCCAAGG GCGATATAAC GCCTGCCGGG 
    ATACAGAAGT TACTGGATGA AAACAATCAG CTGATTCAGT GCATCATGGA CTTCCAGAGT 
    AAAGGAAAAA CAGCTGAATG TTCACACTAC CAACAGATGC TGCACAGAAA TCTGGTGTAT 
    TTGGCGACAA TAGCAGACTC TAATCAGAAC ATGCAGTCTC TGCTCCCTGC GCCGCCCACT 
    CAGAACATGC CTATGAATCA GAGCGGAGCC ACTCCTCAGC TGCCCCACGG TCACAGTATG 
    CCCTCAGAGG GTCCCACCGC CCCACACATG CAGAGCCAGA TGAACGGCCA GATGCCAGGT 
    CCAAATCACA TGTCGATGCA GGGTCCGGGG CCCAACCAAT CATCCAGCAT ACCCAGCGGC 
    TCCATGAACA TACCACCCAG CAGCCACGGC TCCATGGGGG CTTATAACCA CGCCGTGCCC 
    TCCTCACAGG GCATACAGTC ACAGGGGCAG ATGAACATCA ACCAGGGGCA GCCCATGGGC 
    AATTATGGCC CTCGACCCAA CATGAACATG CAGCCCAATC AGGGGCCTAT GATGCACCAG 
    CAGGCTCCTT CCCAGCAGTA CAACATGCCC CCCTCTGGTG GCAGCGGGCA GCATTACCAG 
    GGGCAGCAGA ACCCCATGGG CATGATGGGG CAAGGCAATC ACGTGATGGG GCAGAGGCCA 
    ATGCCGCCAT ACAGGCCACC ACATCAAGGA CCTCCTCAGC AATATCCCGG TCAGGATGAA 
    TATTATACGG AGCAATACAG CCATGGAGGA CAGGGGGCAC CAGAGGGAAA CACACAGTAT 
    GGTCAGCAGC AGGAGGCATA TCAGCAGGGC CCGCCTCAGC AGCAGGGTTA CCCACCGCAG 
    CAGCAGTACA GCGGGCAGCA GGGATACCCG GGACAGCAGC AGGGCTACGG TCCATCACAA 
    GGCGCTCCAA GTCAGTACCC AAACTACCCG CAGAGTCAAG GGCAGCAGTA TTCAGCCTAC 
    AGAGCCCCGC AACCCGGACC ACCACAGGGA CAACCACAGC GCCCGTATGC TTTTGACCAG 
    GGTCAGTATG GAAACTACCA GCAGTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    ss18 ( NM_001291325.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001278254.1 Danio rerio SS18 subunit of BAF chromatin remodeling complex (ss18), transcript variant 2, mRNA.
    Price & Availability↑
    CloneID ODa00938
    Clone ID Related Accession (Same CDS sequence) NM_001291325.1
    Accession Version NM_001291325.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 984bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-04-07
    Organism Danio rerio(zebrafish)
    Product protein SSXT isoform 2
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FP101911.9. On Apr 5, 2014 this sequence version replaced XM_005171107.1. Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GDQQ01010109.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476741 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTCTGTGG CTTTTGCACC GCACCGGCAG CGTGCCAAGG GCGATATAAC GCCTGCCGGG 
    ATACAGAAGT TACTGGATGA AAACAATCAG CTGATTCAGT GCATCATGGA CTTCCAGAGT 
    AAAGGAAAAA CAGCTGAATG TTCACACTAC CAACAGATGC TGCACAGAAA TCTGGTGTAT 
    TTGGCGACAA TAGCAGACTC TAATCAGAAC ATGCAGTCTC TGCTCCCTGC GCCGCCCACT 
    CAGAACATGC CTATGAATCA GAGCGGAGCC ACTCCTCAGC TGCCCCACGG TCACAGTATG 
    CCCTCAGAGG GTCCCACCGC CCCACACATG CAGAGCCAGA TGAACGGCCA GATGCCAGGT 
    CCAAATCACA TGTCGATGCA GGGTCCGGGG CCCAACCAAT CATCCAGCAT ACCCAGCGGC 
    TCCATGAACA TACCACCCAG CAGCCACGGC TCCATGGGGG CTTATAACCA CGCCGTGCCC 
    TCCTCACAGG GCATACAGTC ACAGGGGCAG ATGAACATCA ACCAGGGGCA GCCCATGGGC 
    AATTATGGCC CTCGACCCAA CATGAACATG CAGCCCAATC AGGGGCCTAT GATGCACCAG 
    CAGGCTCCTT CCCAGCAGTA CAACATGCCC CCCTCTGGTG GCAGCGGGCA GCATTACCAG 
    GGGCAGCAGA ACCCCATGGG CATGATGGGG CAAGGCAATC ACGTGATGGG GCAGAGGCCA 
    ATGCCGCCAT ACAGGCCACC ACATCAAGGA CCTCCTCAGC AATATCCCGG TCAGGATGAA 
    TATTATACGG AGCAATACAG CCATGGAGGA CAGGGGGCAC CAGAGGGTCC ATCACAAGGC 
    GCTCCAAGTC AGTACCCAAA CTACCCGCAG AGTCAAGGGC AGCAGTATTC AGCCTACAGA 
    GCCCCGCAAC CCGGACCACC ACAGGGACAA CCACAGCGCC CGTATGCTTT TGACCAGGGT 
    CAGTATGGAA ACTACCAGCA GTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_001278254.1
    CDS127..1110
    Translation

    Target ORF information:

    RefSeq Version NM_001291325.1
    Organism Danio rerio(zebrafish)
    Definition Danio rerio SS18 subunit of BAF chromatin remodeling complex (ss18), transcript variant 2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_001291325.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTCTGTGG CTTTTGCACC GCACCGGCAG CGTGCCAAGG GCGATATAAC GCCTGCCGGG 
    ATACAGAAGT TACTGGATGA AAACAATCAG CTGATTCAGT GCATCATGGA CTTCCAGAGT 
    AAAGGAAAAA CAGCTGAATG TTCACACTAC CAACAGATGC TGCACAGAAA TCTGGTGTAT 
    TTGGCGACAA TAGCAGACTC TAATCAGAAC ATGCAGTCTC TGCTCCCTGC GCCGCCCACT 
    CAGAACATGC CTATGAATCA GAGCGGAGCC ACTCCTCAGC TGCCCCACGG TCACAGTATG 
    CCCTCAGAGG GTCCCACCGC CCCACACATG CAGAGCCAGA TGAACGGCCA GATGCCAGGT 
    CCAAATCACA TGTCGATGCA GGGTCCGGGG CCCAACCAAT CATCCAGCAT ACCCAGCGGC 
    TCCATGAACA TACCACCCAG CAGCCACGGC TCCATGGGGG CTTATAACCA CGCCGTGCCC 
    TCCTCACAGG GCATACAGTC ACAGGGGCAG ATGAACATCA ACCAGGGGCA GCCCATGGGC 
    AATTATGGCC CTCGACCCAA CATGAACATG CAGCCCAATC AGGGGCCTAT GATGCACCAG 
    CAGGCTCCTT CCCAGCAGTA CAACATGCCC CCCTCTGGTG GCAGCGGGCA GCATTACCAG 
    GGGCAGCAGA ACCCCATGGG CATGATGGGG CAAGGCAATC ACGTGATGGG GCAGAGGCCA 
    ATGCCGCCAT ACAGGCCACC ACATCAAGGA CCTCCTCAGC AATATCCCGG TCAGGATGAA 
    TATTATACGG AGCAATACAG CCATGGAGGA CAGGGGGCAC CAGAGGGTCC ATCACAAGGC 
    GCTCCAAGTC AGTACCCAAA CTACCCGCAG AGTCAAGGGC AGCAGTATTC AGCCTACAGA 
    GCCCCGCAAC CCGGACCACC ACAGGGACAA CCACAGCGCC CGTATGCTTT TGACCAGGGT 
    CAGTATGGAA ACTACCAGCA GTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    RFX transcription factors are essential for hearing in mice.
    Nature communications68549(2015 Oct)
    Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R


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