| Gene Symbol | RAT5 |
| Entrez Gene ID | 835553 |
| Full Name | Histone superfamily protein |
| Synonyms | ATHTA1,HTA1,MRB17.14,MRB17_14,RESISTANT TO AGROBACTERIUM TRANSFORMATION 5,histone H2A 1 |
| Gene Type | protein-coding |
| Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » RAT5 cDNA ORF clone
| Gene Symbol | RAT5 |
| Entrez Gene ID | 835553 |
| Full Name | Histone superfamily protein |
| Synonyms | ATHTA1,HTA1,MRB17.14,MRB17_14,RESISTANT TO AGROBACTERIUM TRANSFORMATION 5,histone H2A 1 |
| Gene Type | protein-coding |
| Organism | Arabidopsis thaliana(thale cress) |
| mRNA | Protein | Name |
|---|---|---|
| NM_124845.4 | NP_200275.1 | Histone superfamily protein |
| Pan troglodytes (chimpanzee) | LOC746557 | XP_001166488.1 |
| Rattus norvegicus (Norway rat) | Hist2h2ab | NP_001104811.1 |
| Danio rerio (zebrafish) | LOC100000574 | XP_001334871.1 |
| Danio rerio (zebrafish) | LOC100001004 | XP_001335390.1 |
| Danio rerio (zebrafish) | LOC100151041 | XP_001920286.4 |
| Drosophila melanogaster (fruit fly) | His2A:CG33853 | NP_001027366.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100497456 | XP_002942896.2 |
| Xenopus tropicalis (tropical clawed frog) | LOC100494316 | XP_002944390.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100496440 | XP_002942346.2 |
| Xenopus tropicalis (tropical clawed frog) | hist1h2ah | NP_001120117.1 |
| Xenopus tropicalis (tropical clawed frog) | hist1h2ad | NP_001025503.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100495187 | XP_002943526.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100497614 | XP_004919929.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100487526 | XP_002940841.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101735111 | XP_004915675.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100492813 | XP_002942385.1 |
| Canis lupus familiaris (dog) | LOC100855609 | XP_003639665.1 |
| Bos taurus (cattle) | HIST2H2AB | XP_002686098.1 |
| Danio rerio (zebrafish) | LOC565202 | XP_693579.2 |
| Danio rerio (zebrafish) | LOC100004768 | XP_001338956.1 |
| Danio rerio (zebrafish) | si:ch211-113a14.19 | XP_689030.3 |
| Danio rerio (zebrafish) | zgc:195633 | NP_001136058.1 |
| Anopheles gambiae (African malaria mosquito) | AgaP_AGAP012711 | XP_307083.3 |
| Arabidopsis thaliana (thale cress) | HTA13 | NP_188703.1 |
| Arabidopsis thaliana (thale cress) | HTA10 | NP_175517.1 |
| Arabidopsis thaliana (thale cress) | RAT5 | NP_200275.1 |
| Oryza sativa (rice) | Os07g0545300 | NP_001059914.1 |
| Oryza sativa (rice) | Os12g0438000 | NP_001066688.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100496752 | XP_004919336.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101734557 | XP_004917059.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100493706 | XP_002945549.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100487588 | XP_002943222.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101735276 | XP_004913905.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101734842 | XP_004913902.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101733880 | XP_004913892.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101732823 | XP_004912080.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101732059 | XP_004919109.1 |
| HIST2H2AB | XP_001096734.1 | |
| Danio rerio (zebrafish) | zgc:101846 | NP_001005967.1 |
| Danio rerio (zebrafish) | LOC559220 | XP_005163276.1 |
| Danio rerio (zebrafish) | zgc:110434 | XP_005168861.1 |
| Danio rerio (zebrafish) | LOC100334621 | XP_003201515.1 |
| Danio rerio (zebrafish) | LOC100334934 | XP_002666988.1 |
| Danio rerio (zebrafish) | si:ch211-113a14.16 | XP_688798.1 |
| Anopheles gambiae (African malaria mosquito) | AgaP_AGAP012895 | XP_306256.1 |
| Xenopus tropicalis (tropical clawed frog) | hist1h2aj | NP_001004821.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100497241 | XP_002943147.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101733262 | XP_004917645.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101731897 | XP_004913865.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100485081 | XP_002940826.2 |
| Xenopus tropicalis (tropical clawed frog) | LOC101730371 | XP_004914345.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100485548 | XP_002940829.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101730347 | XP_004913908.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100489065 | XP_004913895.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101733986 | XP_004913893.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100488903 | XP_004913875.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100492873 | XP_002944658.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101731006 | XP_004919327.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100488021 | XP_002942202.2 |
| Mus musculus (house mouse) | Hist2h2ab | NP_835585.3 |
| Danio rerio (zebrafish) | zgc:173652 | NP_001096634.1 |
| Danio rerio (zebrafish) | LOC100004510 | XP_001337024.1 |
| Danio rerio (zebrafish) | LOC570115 | XP_698647.2 |
| Drosophila melanogaster (fruit fly) | His2A:CG33856 | NP_001027371.1 |
| Arabidopsis thaliana (thale cress) | HTA2 | NP_194453.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101731295 | XP_004919909.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100492975 | XP_002942386.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100495988 | XP_002942343.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100495625 | XP_004917049.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100496919 | XP_004919471.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100487632 | XP_002940905.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100488074 | XP_002943225.1 |
| Xenopus tropicalis (tropical clawed frog) | hist2h2ab | NP_001025496.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101734900 | XP_004919083.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100485854 | XP_002941404.1 |
| Homo sapiens (human) | HIST2H2AB | NP_778235.1 |
| Danio rerio (zebrafish) | zgc:114037 | NP_001026996.1 |
| Danio rerio (zebrafish) | si:ch211-113a14.7 | XP_005163251.1 |
| Danio rerio (zebrafish) | LOC100536331 | XP_005163253.1 |
| Drosophila melanogaster (fruit fly) | His2A:CG33859 | NP_001027376.1 |
| Oryza sativa (rice) | Os07g0545400 | NP_001059915.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101730761 | XP_004919903.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100487067 | XP_002942196.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100491383 | XP_004920491.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101730817 | XP_004913914.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101732908 | XP_004917038.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101733656 | XP_004917046.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101734285 | XP_004917055.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC101731908 | XP_004919470.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100496089 | XP_002943318.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100496244 | XP_002943319.1 |
| Xenopus tropicalis (tropical clawed frog) | LOC100486008 | XP_004919104.1 |
Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.
Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See LH, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie WR, Wilson RK, Murphy G, Bancroft I, Volckaert G, Wambutt R, D?sterh?ft A, Stiekema W, Pohl T, Entian KD, Terryn N, Hartley N, Bent E, Johnson S, Langham SA, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst RK, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes HW, Bevan M, Fransz P, , ,
Nature408(6814)823-6(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Clustered pathways are characterized by distinct chromatin signatures of H3K27me3 and H2A.Z, associated with cluster repression and activation, respectively, and represent discrete windows of co-regulation in the genome.
Title: Delineation of metabolic gene clusters in plant genomes by chromatin signatures.
Mutation of HTA1, the gene encoding histone H2A-1, results in decreased T-DNA integration into the genome of Arabidopsis roots, whereas overexpression of HTA1 increases transformation frequency.
Title: Overexpression of several Arabidopsis histone genes increases agrobacterium-mediated transformation and transgene expression in plants.
Data suggest that, with respect to Agrobacterium-mediated transformation, all Arabidopsis histone H2A proteins are functionally redundant.
Title: Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members.
The following RAT5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the RAT5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OAb21425 | |
| Clone ID Related Accession (Same CDS sequence) | NM_124845.4 | |
| Accession Version | NM_124845.4 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 393bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-13 | |
| Organism | Arabidopsis thaliana(thale cress) | |
| Product | Histone superfamily protein | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_124845.3. | |
1 | ATGGCTGGTC GTGGAAAAAC TCTTGGATCC GGTGGGGCGA AGAAAGCTAC ATCTCGGAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_200275.1 |
| CDS | 254..646 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_124845.4 |
1 | ATGGCTGGTC GTGGAAAAAC TCTTGGATCC GGTGGGGCGA AGAAAGCTAC ATCTCGGAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. |